PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400041250 | ||||||||
Common Name | LOC102580843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18673.4 Da PI: 8.9758 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136 | 1.4e-42 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C+++Cv++pyfp ++p+kfa vhk+FGasnv k+l++l+e +r da+ss+vyeA+ar++dP+yG+vg+i++lq+q+e PGSC0003DMP400041250 14 PCAACKLLRRRCTQHCVFSPYFPGDEPHKFASVHKVFGASNVNKMLQELQEYQRGDAVSSMVYEANARMKDPIYGCVGTISSLQHQIEF 102 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++la +++e PGSC0003DMP400041250 103 LHKQLAIAQAE 113 ******99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.37 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-42 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MKESGGRKQG ATSPCAACKL LRRRCTQHCV FSPYFPGDEP HKFASVHKVF GASNVNKMLQ 60 ELQEYQRGDA VSSMVYEANA RMKDPIYGCV GTISSLQHQI EFLHKQLAIA QAELVHMKMK 120 QFSSMSGGAG TATNLLGNVW SPPSRPLSSE VYSGFEVYGF LQQPQINIL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-46 | 10 | 136 | 7 | 129 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-46 | 10 | 136 | 7 | 129 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400041250 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC212792 | 1e-114 | AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence. | |||
GenBank | HG975451 | 1e-114 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 1e-114 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365826.1 | 1e-125 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 6e-60 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | M1C7B3 | 1e-124 | M1C7B3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061283 | 1e-125 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-62 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400041250 |
Entrez Gene | 102580843 |
Publications ? help Back to Top | |||
---|---|---|---|
|