PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041031
Common NameLOC102596234
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 295aa    MW: 30815.8 Da    PI: 9.5269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041031genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                          -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                          k ++C  f+ t  C++G++C+F H
  PGSC0003DMP400041031 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                          7789******************** PP
2zf-CCCH28.62.4e-0997122227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+ f     Ck+Gd+C++aHg+
  PGSC0003DMP400041031  97 KTKLCNKFNTAEGCKFGDKCNYAHGE 122
                           9***********************96 PP
3zf-CCCH37.54e-12262285226
                           -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                           kt+lC +fa+ G C +GdrC+FaHg
  PGSC0003DMP400041031 262 KTKLCENFAK-GSCTFGDRCHFAHG 285
                           9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-83659IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-894125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1294125IPR000571Zinc finger, CCCH-type
SMARTSM003560.001895122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.42795123IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-697122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.19E-15162238IPR004088K Homology domain, type 1
SMARTSM003229.6E-13166236IPR004087K Homology domain
PROSITE profilePS5008414.634167231IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.3E-16168236IPR004088K Homology domain, type 1
CDDcd001051.84E-14169231No hitNo description
PfamPF000137.7E-12169233IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-15258291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8259290IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.22260287IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9262285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDFRKRTRND VGANVNGGVK KYKPEMDSIS GGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYSAVTQ MMKLTPAPSL RNAAAPPNSN GNAPSMKTKL CNKFNTAEGC KFGDKCNYAH  120
GEWEIGKHTI PSQEDPRAMG FGSMPGRFGG GRGEPAISGP AASFGTSATA KISVDASLAG  180
AIIGKGGVNS KQICRQTGAK LAIRDHETDA NLRNIELEGT FEQISQASAM VRELINSLGP  240
VGGPGRTHGN SGGPAPPMNN LKTKLCENFA KGSCTFGDRC HFAHGAAELR KTGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442860.0AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351343.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1C6S20.0M1C6S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-60C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]