PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041003
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 434aa    MW: 47631 Da    PI: 7.8473
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041003genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.96.9e-11147188546
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                           k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  PGSC0003DMP400041003 147 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 188
                           7789*************************9999998888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-8143206IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358145189IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-7147191No hitNo description
CDDcd147088.05E-21147198No hitNo description
PfamPF001704.6E-8147189IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-8148193No hitNo description
PROSITE patternPS000360150165IPR004827Basic-leucine zipper domain
PfamPF141441.2E-33229304IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGTEGNNTNT SRMSEFGVLE QYLGFRIGDG ANVNRSPLFN STSAANPAVG FDVSGTINRN  60
LAPSNTSLST AAPGSHVIQL QSNLVPAAGT HPENWGESNM ADSGSRTDTS TDMDGDDRNQ  120
RIETGQSRAI AASDSSDKSK EKVLDQKTLR RLAQNREAAR KSRLRKKAYV QQLENSRLKL  180
SQLEQDLQRA RQQGKYISNM ADQSNGAGAS GTLAFDAEYS RWLEEHNKHI NELRTAVNSH  240
ASDPELRSIV NNVTAHYDEV FRVKGNAAKA DVFHVLSGMW KTPAERCFMW IGGFRPSELL  300
KLLVNQLEPL TEQQLAGIYN LQQSSHQAED ALSQGMEALQ QSLAETLANG SPATEGSSGD  360
VANYMGQMAM AMGKLGTLEG FLRQADNLRQ QTLQQMHRIL TTRQSARALL AISEYFSRLR  420
ALSSLWLARP REQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3869460.0GQ386946.1 Capsicum annuum leucine zipper transcription factor TGA (TGA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351371.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLM1C6P40.0M1C6P4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000609260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-151TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]