PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040954
Common NameLOC102595335
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 375aa    MW: 42241.1 Da    PI: 4.9809
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040954genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like962.8e-30218272155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r+rW+++LH+rF+e+v++LGG++kAtPk+il+lm+ ++Ltl+hvkSHLQkYR+
  PGSC0003DMP400040954 218 KTRIRWNEDLHDRFLECVNRLGGADKATPKQILNLMDSDCLTLDHVKSHLQKYRS 272
                           68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.287215275IPR017930Myb domain
SuperFamilySSF466891.33E-15216273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-27216274IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24218273IPR006447Myb domain, plants
PfamPF143799.0E-20301347IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSIQGFISTQ GNEYFSSDYS LGVSKNSAQD LVDQELQYSS YMETCLPVVS SSSSSIINCI  60
GSPSSAFFAT ERCLGLTQYD NQYDTSELIK NCDVQMSSFD PQQCKNGILE DSLAKGEADF  120
RHEISLPSFI RTEFSTSPFS DVSESEKESL LHLKNELLGE FDTSYQRHPL LPFDGNQDYC  180
LSHDLCCSQL ANTRQQFASP SFTCHNFASS GVSHKPSKTR IRWNEDLHDR FLECVNRLGG  240
ADKATPKQIL NLMDSDCLTL DHVKSHLQKY RSAKHQESAG KSEKRNSPDA MTDIESKTGR  300
EIKEALKMQL EVQRCLHEQL ETQRTLQMRI EEQAKKLKMI LDQQQKTNMT LLETRNSNIS  360
SSGVEILVVE DTDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17218276260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351341.20.0PREDICTED: uncharacterized protein LOC102595335
TrEMBLM1C6J90.0M1C6J9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000608550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-55G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]