PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040865 | ||||||||
Common Name | LOC102595429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 32430.8 Da PI: 6.5147 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 154 | 204 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr ++ +g+++AeIrd + ng r++lg+f t eeAa a+++a++ ++g PGSC0003DMP400040865 154 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFNTGEEAALAYDQAALTMRG 204 799******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.17E-27 | 153 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-28 | 154 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.47 | 154 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-34 | 154 | 218 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-13 | 154 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 154 | 213 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.9E-9 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-9 | 178 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEFSSPKIQY PNFNFFQDQS PLPWNDQHFL DEYMTNYPWD VDSIDQNNDH YLPRSSSFSE 60 NNSSKKCYPL KVDYIDQNND HYLSKSSSFS TSKGSYTWEV ASSNQKDNDH QLPRSFSYSE 120 DTNSSKESNN HHDIEEVTSH HDNNNSTKLE EKKHYIGVRK RPWGKYAAEI RDSTRNGIRV 180 WLGTFNTGEE AALAYDQAAL TMRGPLALLN FPMDKVRESL ENIKYICEDG ISPAAVLKAT 240 NKMRCVKHKR NRKKRKRENN VFVFEDLGAE LLDELLMST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 153 | 213 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 256 | KHKRNRKKRKR |
2 | 248 | 256 | KRNRKKRKR |
3 | 251 | 256 | RKKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400040865 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-157 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346761.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | M1C6B7 | 0.0 | M1C6B7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400060732 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-41 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040865 |
Entrez Gene | 102595429 |
Publications ? help Back to Top | |||
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