PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040827
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 340aa    MW: 37550.1 Da    PI: 9.1625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040827genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20105154255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++ ++k++g
  PGSC0003DMP400040827 105 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDETALKFRG 154
                           7********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-22105163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-32105163IPR001471AP2/ERF domain
PROSITE profilePS5103225.001105162IPR001471AP2/ERF domain
SMARTSM003801.3E-36105168IPR001471AP2/ERF domain
PfamPF008471.5E-13105154IPR001471AP2/ERF domain
PRINTSPR003674.7E-12106117IPR001471AP2/ERF domain
CDDcd000182.04E-28113164No hitNo description
PRINTSPR003674.7E-12128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSVMVSALTR VITGEDRILN QENNNNIIGS SSLNEFSGGV GEKRGREEQQ YFLSDIISSS  60
TGGEVNRTIA SNTPTTEATF IYTTPTYDHN NNNTNVIDYN QPRRRYRGVR QRPWGKWAAE  120
IRDPYKAARV WLGTFDTAED AARAYDETAL KFRGSKAKLN FPENVRLLPT SSIPRQGFSM  180
EKQSPASTFP TNSVENNMVF STEKQFMTGT FPTNSMENVP VSSIISPNTS PNTLSTISFS  240
PNSNPIVHAQ SSNRNSNMNP QYFLNDDFQR GHSSLSLLNQ SMLSTRFQYS SSPSSSSTSR  300
VPVVPSMYFS GSQPTSQSSE SDFRATSSDS AHHPSSSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-25104165163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU8562511e-161CU856251.8 S.lycopersicum DNA sequence from clone LE_HBa-70F1 on chromosome 4, complete sequence.
GenBankHG9755161e-161HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346730.20.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLM1C6820.0M1C682_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000606590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.17e-30ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]