PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040771
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 525aa    MW: 58682.5 Da    PI: 6.863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040771genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.51.8e-1291545241374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l+elL++cAeav++ d++ a+ l+  l++++s +g+pmqRl ay++e+L+arl++s+s++yk+l+++e +   sse l++++++++++P
  PGSC0003DMP400040771 154 LKELLVACAEAVDEADTSTAEVLMDALEKRVSVSGEPMQRLSAYMLEGLRARLLSSGSNIYKKLKCNEPT---SSELLSYMQVLYNITP 239
                           5799*****************************************************************9...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           ++kf+++ aN  I ea+++e+r+HiiDf+i qG QW+ L++ La Rp+gpp lRiTgv++++s   +   l+ +gerLa++A+++gvpf
  PGSC0003DMP400040771 240 YFKFAYMSANVVISEAMKNENRIHIIDFQIAQGSQWMFLIHYLARRPGGPPFLRITGVDDSQSAhaRGGGLQLVGERLASIAKSCGVPF 328
                           ************************************************************9988889999******************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef+  +a +  +++le+Lrv++gE+laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v +veqe+++n+++Fl rf e+l+y+ 
  PGSC0003DMP400040771 329 EFHN-AALSGCMVKLENLRVRHGESLAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVALVEQEMNTNTAPFLPRFRETLDYHK 416
                           ****.8999******************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+s++++ pr++ +ri  E+++++r++vn++acega+r+erhe ++kWr+rl +aGF+p pls ++a+++k +l++++s+ y++ e+
  PGSC0003DMP400040771 417 AMFESVDVTRPRNDMQRIRSEEHCIARDVVNLIACEGADRVERHEVFGKWRSRLLMAGFTPCPLSPSVAETIKVMLKEYSSN-YKLAES 504
                           ********************************************************************************77.****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           +g+l++gW++r+L + SaW+
  PGSC0003DMP400040771 505 QGALYIGWNNRALATSSAWQ 524
                           *******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.267128505IPR005202Transcription factor GRAS
PfamPF035146.1E-127154524IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MQQVQQYYTP CHASDNSSYN DGSNSGTEVS LKTQNEKFFT MDSFPATDCA IYDADPSISV  60
SSNRSPFSPQ CSQSNMFEKR RSSENTSGSP VSLCSGVDDS NGKKHELWEL NNKLLRPESD  120
IDDSCSCSLN GVVSKHFSLT RRNQVLDVAS RLDLKELLVA CAEAVDEADT STAEVLMDAL  180
EKRVSVSGEP MQRLSAYMLE GLRARLLSSG SNIYKKLKCN EPTSSELLSY MQVLYNITPY  240
FKFAYMSANV VISEAMKNEN RIHIIDFQIA QGSQWMFLIH YLARRPGGPP FLRITGVDDS  300
QSAHARGGGL QLVGERLASI AKSCGVPFEF HNAALSGCMV KLENLRVRHG ESLAVNFPYM  360
LHHMPDESVS TMNHRDRLLR LVKSLSPKIV ALVEQEMNTN TAPFLPRFRE TLDYHKAMFE  420
SVDVTRPRND MQRIRSEEHC IARDVVNLIA CEGADRVERH EVFGKWRSRL LMAGFTPCPL  480
SPSVAETIKV MLKEYSSNYK LAESQGALYI GWNNRALATS SAWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5916152326378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040771
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346781.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_006346782.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_015163995.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLM1C6310.0M1C631_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000605530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]