PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400040748

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ARR-B

Protein Properties

Length: 253aa MW: 28383.2 Da PI: 5.2172

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400040748	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29.3	1.9e-09	219	240	1	22
G2-like 1 kprlrWtpeLHerFveaveqLG 22 kpr++W+ eLH++Fv+av+qLG PGSC0003DMP400040748 219 KPRVVWSVELHQQFVQAVNQLG 240 79*******************5 PP
2	Response_reg	78.7	2.1e-26	39	147	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl+vdD+p+ +++l+++l++ +y ev+ +e al +l+e++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + PGSC0003DMP400040748 39 VLVVDDDPTCLMILEKMLRNCHY-EVTKSNRAEHALSMLRENRngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKDVVM 125 89*******************.***********99999*******************6644.8************ PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ +e+l + PGSC0003DMP400040748 126 KGVTHGACDYLIKPVRIEALKN 147 ****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	4.4E-123	18	247	IPR017053	Response regulator B-type, plant
Gene3D	G3DSA:3.40.50.2300	8.9E-44	36	160	No hit	No description
SuperFamily	SSF52172	1.35E-36	36	159	IPR011006	CheY-like superfamily
SMART	SM00448	8.4E-30	37	149	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	42.532	38	153	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	6.8E-24	39	147	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	5.26E-28	40	153	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-9	216	244	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0010082	Biological Process	regulation of root meristem growth
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0031537	Biological Process	regulation of anthocyanin metabolic process
GO:0048367	Biological Process	shoot system development
GO:0080022	Biological Process	primary root development
GO:0080036	Biological Process	regulation of cytokinin-activated signaling pathway
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MNLGVGSVVK TMSGASCSVS WKSGGSDKVS DQFPAGLRVL VVDDDPTCLM ILEKMLRNCH 60 YEVTKSNRAE HALSMLRENR NGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS 120 KDVVMKGVTH GACDYLIKPV RIEALKNIWQ HVIRKKKHEL KDKDFDQSTS VEDGDQQQKP 180 PEDVDYSSSA NEGNWKSSKR RKEEEDETEE RDDLSTSKKP RVVWSVELHQ QFVQAVNQLG 240 IDSMHLLAIS LP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269\|PubMed:11370868, ECO:0000269\|PubMed:11574878, ECO:0000269\|PubMed:15282545, ECO:0000269\|PubMed:16407152}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400040748

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF412542	0.0	JF412542.1 Nicotiana tabacum RRB2 type-b response regulator mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345976.1	1e-178	PREDICTED: two-component response regulator ARR1-like
Swissprot	Q9ZWJ9	1e-104	ARR2_ARATH; Two-component response regulator ARR2
TrEMBL	M1C608	0.0	M1C608_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400060506	1e-177	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	4e-95	response regulator 2

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400040748

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Ge XM, et al. Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis. Plant J., 2015. 82(1): p. 138-50 [PMID:25704455] Takahashi N,Umeda M Cytokinins promote onset of endoreplication by controlling cell cycle machinery. Plant Signal Behav, 2014. 9(8): p. e29396 [PMID:25763620] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Arnaud D, et al. Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis. Plant Cell, 2017. 29(3): p. 543-559 [PMID:28254779] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Takatsuka H,Higaki T,Umeda M Actin Reorganization Triggers Rapid Cell Elongation in Roots. Plant Physiol., 2018. 178(3): p. 1130-1141 [PMID:30185441]