PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040746
Common NameLOC102586468
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 425aa    MW: 46469.1 Da    PI: 6.3156
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040746genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.32.3e-154332655
               G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          +A+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  PGSC0003DMP400040746  4 EAVPKKILELMNVPGLTRENVASHLQKYRL 33
                          79***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-15338IPR009057Homeodomain-like
SuperFamilySSF466893.05E-8437IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-13433IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MISEAVPKKI LELMNVPGLT RENVASHLQK YRLYLRRLSG VSQHQNGLNN SFMGHPEATY  60
GTMTSFNGLE LQALAATGQL PAQSLATLQA AALGRSATKS AISMPLVDQR NLFSFENPKL  120
RFSEGQQQLN NSNKQINLLH GIPTTMEPKQ LADLHQSSQS FVAMNMQGNA RMQQNNALLM  180
HMSQQQQQSS RAQMLNETNN GQVSRPPLSM SQPAAVLSRN SIVDNVRGPI YNPVSQTSSM  240
VDFSLNQTTE LQNNSFPLVS SNSGMSTLTS KRLLQEEVNS DIKGSRGFPP GYDIFEELHQ  300
QKTQDWGLPN IGSNFSASDH SSIPGTLDVS PSMLVQQGIS SMKKNGQNGN YPMGGPQLNL  360
FSGGNLLPVK AEQLPDTSYQ NTFFPEQFGQ DDLMSALLKQ QESVGQVETE FGFDGYSPLD  420
NLPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345976.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLM1C6060.0M1C606_SOLTU; Uncharacterized protein
TrEMBLM1C6070.0M1C607_SOLTU; Two-component response regulator
STRINGPGSC0003DMT4000605060.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.24e-62response regulator 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]