PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040606
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 313aa    MW: 34207 Da    PI: 5.6671
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040606genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.6e-31253307155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr+rWtpeLHe Fvea+++LGGsekAtPk +l+lm+v+gLt++hvkSHLQ +R 
  PGSC0003DMP400040606 253 KPRMRWTPELHEVFVEAISKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQEHRK 307
                           79**************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.841250310IPR017930Myb domain
SuperFamilySSF466893.76E-17251308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28252307IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-23253308IPR006447Myb domain, plants
PfamPF002491.5E-8255305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNMHRALGIQ RSSETQHSNM GVCGAMSTSL SILPSFEEKY LKVPDSLHVL TEKEQTTNLI  60
SSRAIPSTSK SGTVGHLLSS TSGPHKDFHF SPTPSQESRQ HSYPFISSEA SAATCQSSLS  120
NIHSTSLDNY PMENSNNSWG EDAYHDCINF SMNVPVQNDQ VESLAVVMTS DDQVKRSDWQ  180
DWSDQLINDD DVLDSSWSDI LVDINPPDTK FLGESEVHAC QSDTLPPLPA AAAALSGQSC  240
LVGSPSSTTA LTKPRMRWTP ELHEVFVEAI SKLGGSEKAT PKGVLKLMNV EGLTIYHVKS  300
HLQEHRKRRP SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-27253309258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2383420.0AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345808.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLM1C5M20.0M1C5M2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000603240.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.44e-47G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]