PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040605
Common NameLOC102589864
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 473aa    MW: 52256.1 Da    PI: 5.5662
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040605genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.92.3e-33253307155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr+rWtpeLHe Fvea+++LGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+
  PGSC0003DMP400040605 253 KPRMRWTPELHEVFVEAISKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 307
                           79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.124250310IPR017930Myb domain
SuperFamilySSF466894.84E-18251307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30252309IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25253307IPR006447Myb domain, plants
PfamPF002492.5E-9255306IPR001005SANT/Myb domain
PfamPF143791.3E-23340383IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNMHRALGIQ RSSETQHSNM GVCGAMSTSL SILPSFEEKY LKVPDSLHVL TEKEQTTNLI  60
SSRAIPSTSK SGTVGHLLSS TSGPHKDFHF SPTPSQESRQ HSYPFISSEA SAATCQSSLS  120
NIHSTSLDNY PMENSNNSWG EDAYHDCINF SMNVPVQNDQ VESLAVVMTS DDQVKRSDWQ  180
DWSDQLINDD DVLDSSWSDI LVDINPPDTK FLGESEVHAC QSDTLPPLPA AAAALSGQSC  240
LVGSPSSTTA LTKPRMRWTP ELHEVFVEAI SKLGGSEKAT PKGVLKLMNV EGLTIYHVKS  300
HLQKYRTARY KPEPSEGTPE KKTISVTEMS SLDLKTTIGI TEALRMQIEV QKQLHEQLEI  360
QRKLQLRIEE QGKYLEMMFE KTKDIGKDLK VSSSSRTDEH PSPSNKTKHT SPNDKSEALE  420
KDPMSLNDRS SSGGNSPDKK AREDHESDDR DMCCSPPSKR AKTEETSGFH ES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-29253311260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2383420.0AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345808.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLM1C5M10.0M1C5M1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000603240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45822139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.18e-88phosphate starvation response 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]