PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040530
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 467aa    MW: 51865.4 Da    PI: 4.309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040530genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEdellv++++  G g+W++ ++  g+ R++k+c++rw +yl
  PGSC0003DMP400040530 14 KGKWTDEEDELLVKYIQVNGEGSWRSLPKNAGLSRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding56.46.7e-1867111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg++T+eEde++v+++  lG++ W++Ia+ +  gRt++++k++w++ 
  PGSC0003DMP400040530  67 RGKFTAEEDEIIVKLHSTLGNR-WSSIAQLLS-GRTDNDIKNYWNSN 111
                           89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.879961IPR017930Myb domain
SuperFamilySSF466897.86E-3011108IPR009057Homeodomain-like
SMARTSM007175.1E-141363IPR001005SANT/Myb domain
PfamPF002494.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-231568IPR009057Homeodomain-like
CDDcd001671.29E-91661No hitNo description
PROSITE profilePS5129427.06762116IPR017930Myb domain
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2569116IPR009057Homeodomain-like
CDDcd001675.95E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVKAPCCENF GLKKGKWTDE EDELLVKYIQ VNGEGSWRSL PKNAGLSRCG KSCRLRWTNY  60
LRPNLKRGKF TAEEDEIIVK LHSTLGNRWS SIAQLLSGRT DNDIKNYWNS NLRRRIYTFR  120
NLKELIKTTA NVPKIVVDGS CGESSIKQGT TIGSEGGSIE SFLPEKNIVD DIGSPRKNNS  180
SLCDDSRGDT TLSEGRSIES LLPEDNIVVD RGSTRKSDSS CLGSKDEAMW SEGNSIESLL  240
PKNYNVDIGS LRKSNSLCPR DKDDATWLGV GLIESLLSED IETNSSCSRG MSNATWSEEN  300
SIESLLVENY VVDIGSNQET NFSCLEGKDG ATWSEEGVSF ESLLLENIET NSACHNWFEE  360
SSIESFLLES YIVDIVCNRE TNSSYLEDPA MWSEEGSSIE YPLMENYSVD QGSNRETNFS  420
CLRGKDGAMS SEEGSSIESL LTKNYIDDLE FLTQSSLDEI KGLAMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-29121162105C-Myb DNA-Binding Domain
1msf_C3e-29121162105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574541.11e-140PREDICTED: transcription factor MYB108-like
TrEMBLM1C5G20.0M1C5G2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-59myb domain protein 111
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]