PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400040516
Common NameLOC102598708
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 303aa    MW: 33819.3 Da    PI: 9.8259
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400040516genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-3881141262
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           +e+al+cprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s
  PGSC0003DMP400040516  81 PETALNCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRS 141
                           67899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3169134IPR003851Zinc finger, Dof-type
PfamPF027016.4E-3284139IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4685139IPR003851Zinc finger, Dof-type
PROSITE patternPS01361087123IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAFSSIPFYL DPPNWHHEQG NHHQQQQQQL GVTNGNSSQL SPAVLPPPEA ATSPGGGGGP  60
AGSIKSGSIT ERARLAKITQ PETALNCPRC ESTNTKFCYF NNYNLSQPRH FCKTCRRYWT  120
RGGALRNVPV GGGCRRNNKR SSSKRTRSSK SPIRSERSRN VPIITSNSTT TTTFPSHFPP  180
PSTHLSFLNT PFHNFNHFNS TQNGLNFGEI QPHEGDATFV DQFRHQQMQQ FSFFSPLEQP  240
SNLYPIYSEF GISHHDLENV KVEENKSSTS TQGMNLQRNN NLGVNQFWTN YNISSTSTSQ  300
LL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400040516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1862900.0AC186290.2 Solanum lycopersicum chromosome 5 clone C05HBa0131D04, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346013.10.0PREDICTED: dof zinc finger protein DOF3.6
TrEMBLM1C5E80.0M1C5E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602160.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.14e-43OBF-binding protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]