PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400040093

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

CPP

Protein Properties

Length: 892aa MW: 95933.1 Da PI: 6.6604

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400040093	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.8	1.3e-15	523	561	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag++C ++C+C++C+N+ e PGSC0003DMP400040093 523 CKRCNCKKTKCLKLYCDCFAAGVYCVDSCTCQGCFNRPE 561 79**********************************876 PP
2	TCR	50.6	3.8e-16	610	648	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN PGSC0003DMP400040093 610 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 648 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.6E-15	521	562	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.433	522	650	IPR005172	CRC domain
Pfam	PF03638	1.8E-11	524	559	IPR005172	CRC domain
SMART	SM01114	3.5E-17	610	651	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-11	612	647	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 892 aa Download sequence Send to blast
MDSPEPSSKI TATINNTLSS DPVPAQDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL 60 LLTSPRINTH SRSSLLKRSQ FPKLSTEVFS GKNEDYNNAI TDSDGTGVVF SPLRSGLSPF 120 VQKVSDNNIS VHEQSGTPIR CVEFLVDVSN SESGNPSNSN NTSPEVADSI PQSPNSAEDS 180 KVSVVNIASK DERKDEIPED AARVVVEQAE EDNKGKFPSN QKYTGVYSTS DPDLPSHGFC 240 TKIVPSLAAH SSLHYHYGDQ QMAQLSTAGH TMLDEASNIP IKSLETAHDC RDDSDKIRMS 300 IAPDEGIALH DSQTKAGQHQ SGISRRCLQF EDAQQKMAPA SSSSQNASGI VSCSIQPVSP 360 AVIEVVEPVS SNRSSKLTQL VSSSVNSESL NVKVSKPSGI GLHLNSIVNG MEAGSGVTVS 420 VKSIQRGNLS IRGKKLTSMM SCHPSKNLKN CLISSNVVGS NLTIGDNDGK HESYGSDAEI 480 VAASLSLNNA KPLNDTVLLK PTEHTPSNKR KKKTLDGNDG DGCKRCNCKK TKCLKLYCDC 540 FAAGVYCVDS CTCQGCFNRP EYEDTVLDVR QQIQSRNPLA FAPKIVQHST SSPANILGEG 600 GASFTPSSAR HKRGCNCKKS MCLKKYCECY QANVGCSSGC RCEGCKNVFG PKEECGIDLV 660 NKHCITERLE RSVEEEVEMV TATTAYGLSP GSPRSSNNHD IHQETTGDML DLVTFDHELN 720 YGNAKLANEI SPGFHVTGNM DDILALPKSQ DWASNSGGQL IPQTVHFQST DPLSWHNSPM 780 TQFDRSGMNT LELLDSDKKP YVMEDDTPEI LKASSILQIG VKVNSPNKKR VSPPYRHLNE 840 IGSSSSGGGL KTGRKFILRA VPSFPPLSPC IQSKDVAVHS TNNSEKDSSS K*

Sequence ? help Back to Top

Protein Sequence Length: 892 aa Download sequence Send to blast

MDSPEPSSKI TATINNTLSS DPVPAQDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL  60
LLTSPRINTH SRSSLLKRSQ FPKLSTEVFS GKNEDYNNAI TDSDGTGVVF SPLRSGLSPF  120
VQKVSDNNIS VHEQSGTPIR CVEFLVDVSN SESGNPSNSN NTSPEVADSI PQSPNSAEDS  180
KVSVVNIASK DERKDEIPED AARVVVEQAE EDNKGKFPSN QKYTGVYSTS DPDLPSHGFC  240
TKIVPSLAAH SSLHYHYGDQ QMAQLSTAGH TMLDEASNIP IKSLETAHDC RDDSDKIRMS  300
IAPDEGIALH DSQTKAGQHQ SGISRRCLQF EDAQQKMAPA SSSSQNASGI VSCSIQPVSP  360
AVIEVVEPVS SNRSSKLTQL VSSSVNSESL NVKVSKPSGI GLHLNSIVNG MEAGSGVTVS  420
VKSIQRGNLS IRGKKLTSMM SCHPSKNLKN CLISSNVVGS NLTIGDNDGK HESYGSDAEI  480
VAASLSLNNA KPLNDTVLLK PTEHTPSNKR KKKTLDGNDG DGCKRCNCKK TKCLKLYCDC  540
FAAGVYCVDS CTCQGCFNRP EYEDTVLDVR QQIQSRNPLA FAPKIVQHST SSPANILGEG  600
GASFTPSSAR HKRGCNCKKS MCLKKYCECY QANVGCSSGC RCEGCKNVFG PKEECGIDLV  660
NKHCITERLE RSVEEEVEMV TATTAYGLSP GSPRSSNNHD IHQETTGDML DLVTFDHELN  720
YGNAKLANEI SPGFHVTGNM DDILALPKSQ DWASNSGGQL IPQTVHFQST DPLSWHNSPM  780
TQFDRSGMNT LELLDSDKKP YVMEDDTPEI LKASSILQIG VKVNSPNKKR VSPPYRHLNE  840
IGSSSSGGGL KTGRKFILRA VPSFPPLSPC IQSKDVAVHS TNNSEKDSSS K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-22	524	647	12	120	Protein lin-54 homolog
5fd3_B	1e-22	524	647	12	120	Protein lin-54 homolog
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400040093

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015159356.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X2
TrEMBL	M1C4F7	0.0	M1C4F7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400059571	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-62	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400040093

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]