PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039819
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 335aa    MW: 38062.9 Da    PI: 6.1918
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039819genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.21e-3290185189
                   TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnss 86 
                           a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l +   +++ +c   ++++ + s ++++
  PGSC0003DMP400039819  90 ATGRKDRHSKVSTARGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEF--PNNFHCtklNPKKMQYSFDQEQ 176
                           589***********************************************************998..5555576666666666666555 PP

                   TCP  87 sg......k 89 
                           s+      +
  PGSC0003DMP400039819 177 SPrfsqenR 185
                           553432221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3091195IPR005333Transcription factor, TCP
PROSITE profilePS5136930.06793151IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNHQFQVSDE EDGSEEEEEE EEEVFQENGI RNLQNHYQNQ QMPQSLCKKP AKWANFTVCE  60
QELNKGTRRM KPKRAKTDVI EGHGGRIIRA TGRKDRHSKV STARGPKDRR VRLSPNTAIQ  120
FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA LGEFPNNFHC TKLNPKKMQY SFDQEQSPRF  180
SQENRGVPNS ENGVQHNQQE VNYDIPIQNF NLFSSSDGFK IPFLSELQSY PHGHSLNFQS  240
LQDDTILSSG NHHHQGSFLT TTSVNHFPSV LSQNQVFSHR EPLQSSFFPL MSDPLSTQLE  300
TLSYGFANDG FSGLISSASR IQGEEEQATF FSAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2098151154Putative transcription factor PCF6
5zkt_B8e-2098151154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773RRMKPKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.10.0transcription factor TCP10-like
TrEMBLM1C3U20.0M1C3U2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000591170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.13e-36TCP domain protein 10
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]