PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Whirly | ||||||||
Protein Properties | Length: 215aa MW: 23811.5 Da PI: 10.987 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 188.8 | 8.8e-59 | 61 | 205 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkq......sfalsatevaelvdlaskesceffhdpaak 83 sv+k+kaal+ ++++ptf+ ldsg +kl+r+G ++l++ ++++erkydWek+q + lsatev++l+++++++s+effhdp++ PGSC0003DMP400039763 61 SVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQmtqhiaVVCLSATEVGSLISMGTRDSSEFFHDPSML 149 79*************************************************98443333468*************************** PP Whirly 84 gsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +sn+G+vrk+l+++P +dGsG+f++lsv n+ +k+n++f+vPv+ aefav+r++++ PGSC0003DMP400039763 150 SSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 205 *****************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.3E-60 | 49 | 205 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.18E-50 | 54 | 206 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 7.5E-55 | 62 | 202 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MLKVSRLLHP RNQLLHKKLP GECVKGSIWQ HAINTFAGFS TVRQNVVADG KREGRVFAPY 60 SVFKGKAALS AEPRLPTFNR LDSGGVKLNR RGVIMLTFWP SVGERKYDWE KRQMTQHIAV 120 VCLSATEVGS LISMGTRDSS EFFHDPSMLS SNAGQVRKSL SIKPNADGSG YFISLSVVNN 180 NLKTNDRFTV PVTTAEFAVM RTAFSVRSTN MFLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 1e-102 | 50 | 205 | 5 | 154 | StWhy2 |
3n1i_A | 1e-102 | 50 | 205 | 5 | 154 | protein StWhy2 |
3n1j_A | 1e-102 | 50 | 205 | 5 | 154 | Protein StWhy2 |
3n1k_A | 1e-102 | 50 | 205 | 5 | 154 | protein StWhy2 |
3n1l_A | 1e-102 | 50 | 205 | 5 | 154 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039763 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM234504 | 1e-179 | HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166242.1 | 1e-151 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2 | ||||
Swissprot | D9J034 | 1e-140 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | M1C3P1 | 1e-158 | M1C3P1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400059032 | 1e-158 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9782 | 22 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-77 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039763 |
Publications ? help Back to Top | |||
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