PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 24398.7 Da PI: 9.7926 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.4e-21 | 32 | 82 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka+++a+++++g+ PGSC0003DMP400039575 32 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDNAAREFRGA 82 6********.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.14E-22 | 32 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-39 | 32 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.04E-33 | 32 | 89 | No hit | No description |
PROSITE profile | PS51032 | 23.828 | 32 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-14 | 32 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAPKEKIGAV TAAAAAAVMA VGKLNGISKE VHYRGVRKRP WGRYAAEIRD PGKKSRVWLG 60 TFDTAEEAAK AYDNAAREFR GAKAKTNFPP LQKEEDLKFP VKNEINRSPS QTSTVESSSP 120 VMVDSSSPLD LRLCGSIGGF NHNTVRFPIS GGGFTGAVPA VNHMYYLEAL ARAGVINLET 180 NRKKTVDFLG GGDSDTSTVI DFMRVDVKPT IAGLNLDLNF PPPENM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 28 | 89 | 1 | 63 | ATERF1 |
3gcc_A | 8e-22 | 28 | 89 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039575 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF091875 | 0.0 | EF091875.1 Solanum tuberosum ethylene response factor 3 (ERF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305482.1 | 1e-151 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 2e-41 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | M1C387 | 1e-165 | M1C387_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058751 | 1e-166 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 3e-27 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039575 |
Publications ? help Back to Top | |||
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