PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039559 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 198aa MW: 22562.4 Da PI: 8.6374 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 108.2 | 4.2e-34 | 15 | 71 | 2 | 58 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++k lkcprC+stn kfCyynny+ sqPry+Ck+C+ryWt+GG lrn+P+Gggr+++ PGSC0003DMP400039559 15 PTKPLKCPRCESTNIKFCYYNNYNKSQPRYLCKGCKRYWTQGGLLRNLPIGGGRKNK 71 67899***********************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.7E-30 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.947 | 19 | 73 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 21 | 57 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-16 | 23 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
NIYIFDNLVM KTTKPTKPLK CPRCESTNIK FCYYNNYNKS QPRYLCKGCK RYWTQGGLLR 60 NLPIGGGRKN KLKITSTSRD DNRAGHGECK VSLTLSSPKI FNPSCPAPTT SDITREKSST 120 SQLYETNIPF SIPTSTTSSN IYNYMENLDS NMEEESTITW QGPIRSSVMN NLSNYWNWED 180 IEALISVDDF KNEFGWN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039559 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-136 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507077.1 | 1e-53 | PREDICTED: dof zinc finger protein DOF2.5-like | ||||
TrEMBL | M1C372 | 1e-143 | M1C372_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058729 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6171 | 20 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-24 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039559 |
Publications ? help Back to Top | |||
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