PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039487 | ||||||||
Common Name | LOC107058262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 297aa MW: 33304.6 Da PI: 7.3425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H PGSC0003DMP400039487 102 FSCNFCKREFSTSQALGGHQNAH 124 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-5 | 90 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.79E-6 | 99 | 129 | No hit | No description |
PROSITE profile | PS50157 | 11.531 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MKKPFSFEAS SISATSEESH EVVTNAKKTK EEVVEGSQLK PYDVSSVGVR LDLKDHDSYN 60 NNINTNCSNH ELNLFSSTPA HASESSNEAK PKQRRSSDAR TFSCNFCKRE FSTSQALGGH 120 QNAHKQERAL AKRRNGLVDV VSPFVPHNYH PYYNPYSNLH SRIPFHSSFA SRSSLGVQGD 180 SPAILKPTSY KKWPFFSSYN FPFNPEKWSS STSSSSFFRT ENLQENYNMG KIGTGSASLE 240 NSPYFENKKS GKGFNLVNSP IDVDNLDGKN YTKLKLGEEE EEKNNEEEEL DLNLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039487 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159250.1 | 0.0 | PREDICTED: zinc finger protein 3-like | ||||
TrEMBL | M1C303 | 0.0 | M1C303_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058622 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3967 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 5e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039487 |
Entrez Gene | 107058262 |
Publications ? help Back to Top | |||
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