PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039459 | ||||||||
Common Name | LOC102605338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 28697.1 Da PI: 5.8827 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 103 | 150 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+ +l+g PGSC0003DMP400039459 103 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 150 89**9.55.6*********843...5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-25 | 102 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.44 | 102 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-26 | 102 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.82E-15 | 103 | 158 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-17 | 103 | 159 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-9 | 103 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MADSQNSTKS NQVIQPPHQS SESTKTPFNP TPPPPIPPPP APPPPPETHI QTTNTLLSKF 60 ENTNSTPKTV QLPNIIPATI MSSTSSGSSG SPSRPIGGKH AVFRGIRCRS GKWVSEIREP 120 RKTTRIWLGT YPTPEMAAAA YDVAAMALKG NDAVINFPGN INSYPSLPPS PAAADIRKAA 180 ATAAALMKIE TGETTSGTQP GTDDHQSSGS VHMMETRDHE YIDEEALFDM PNLLVDMAEA 240 MMVSPPRMSS PRSDDSPGHS DAENLWSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 93 | 162 | 5 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039459 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010811 | 0.0 | AP010811.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0019O09, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358864.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 7e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | M1C2X7 | 0.0 | M1C2X7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058587 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039459 |
Entrez Gene | 102605338 |
Publications ? help Back to Top | |||
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