PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TALE | ||||||||
Protein Properties | Length: 313aa MW: 35602 Da PI: 6.8395 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 9.8e-08 | 261 | 294 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + PGSC0003DMP400039417 261 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 294 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.8e-09 | 215 | 236 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ PGSC0003DMP400039417 215 ELKIELKQGFRSRIEDVREEIL 236 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.1E-19 | 43 | 87 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.3E-17 | 45 | 86 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.8E-25 | 104 | 159 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.2E-18 | 108 | 158 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.184 | 215 | 235 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 235 | 298 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-16 | 237 | 302 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-10 | 237 | 302 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.70E-11 | 238 | 299 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-25 | 242 | 300 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 255 | 294 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MQQEQRGLGL MGSSSTTGLG GGDISSMMIS SEDHHNRNLN HQNQLKGEIA THPLYEQLLS 60 AHVACLRVAT PIDQLPLIDA QLSQSHHLLR SYASSQQQQQ QQHHSLSHHE RQELDNFLAQ 120 YLLVLCSFKE QLQQHVRVHA VEAVMACREI EQNLQLLTGA TLGEGTGATM SDDEDELQMD 180 FSLDVSGGDA HDLMGMGFGL PTESERSLME RVRQELKIEL KQGFRSRIED VREEILRKRR 240 AGKLPGDTTT VLKNWWQQHS KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHSNS 300 QSVTSLKSKR KR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 238 | 294 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 311 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ477690 | 0.0 | KJ477690.1 Solanum tuberosum class II knox protein (HOX2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305594.1 | 0.0 | homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-165 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | M1C2T6 | 0.0 | M1C2T6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058528 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6773 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-149 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039417 |
Publications ? help Back to Top | |||
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