PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400039377 | ||||||||
Common Name | LOC102605596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 53223.9 Da PI: 6.5127 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 465.8 | 2.5e-142 | 48 | 469 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cA++v+ g+le+a+ +L ++s+lasp+gd+mqR+a+yf+e La r++rs++++ykal++++ + +se + + k+f+e +P PGSC0003DMP400039377 48 LIHLLLTCANHVAIGNLENANIALDQISHLASPNGDTMQRIASYFAESLADRILRSWNGIYKALNSTKLR--VVSEDILVKKMFFEYFP 134 689**************************************************************99998..69*************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lk++ ++aNqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++ +k+ le++++ L++ Ae+l++pf+f PGSC0003DMP400039377 135 FLKVASVIANQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKQVLEQIAHVLTEEAEKLDIPFQF 219 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214 + v+++le+l++e+Lrvk+gEala+++v+qlh+ll PGSC0003DMP400039377 220 HQ-VVSKLENLDIEKLRVKTGEALAISSVMQLHTLLahddepqkksplgfkhlnglhlqrailnqntlgdlleketttnvfspgnesas 307 **.799*********************************************************************************88 PP GRAS 215 ....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 ++++s+ + d +L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le +l r+s er kvE++l+g+ei+n+va PGSC0003DMP400039377 308 ssplSSTAST--KMDGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYFYAALFDCLEFTLQRTSLERLKVEKMLFGEEIKNIVA 394 7654333333..4699************************************************************************* PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ceg er+erhe+l kW +r++ aGF +vpls++a+ qa++ll+ ++ +gy+++ee+gs+v++W+dr+L++vSaWr PGSC0003DMP400039377 395 CEGGERKERHEKLDKWFQRFDGAGFANVPLSYYAMLQARRLLQSYSCEGYKIKEENGSVVICWHDRALFAVSAWR 469 **************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.083 | 22 | 449 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-140 | 48 | 469 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MLQDDGSSSV TSSSPLQNFP MMSLSPNFGG SPYQWLKDLK SEDRGLYLIH LLLTCANHVA 60 IGNLENANIA LDQISHLASP NGDTMQRIAS YFAESLADRI LRSWNGIYKA LNSTKLRVVS 120 EDILVKKMFF EYFPFLKVAS VIANQAIIEA MEGEKMVHIV DLNASEPLQW RALLQDLSAR 180 PEGPPHLRIT GVHQQKQVLE QIAHVLTEEA EKLDIPFQFH QVVSKLENLD IEKLRVKTGE 240 ALAISSVMQL HTLLAHDDEP QKKSPLGFKH LNGLHLQRAI LNQNTLGDLL EKETTTNVFS 300 PGNESASSSP LSSTASTKMD GFLHALWGLS PKVMVVTEQD SNHNGTTLME RLSESLYFYA 360 ALFDCLEFTL QRTSLERLKV EKMLFGEEIK NIVACEGGER KERHEKLDKW FQRFDGAGFA 420 NVPLSYYAML QARRLLQSYS CEGYKIKEEN GSVVICWHDR ALFAVSAWRC RR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-40 | 32 | 471 | 2 | 380 | Protein SCARECROW |
5b3h_D | 2e-40 | 32 | 471 | 2 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400039377 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362746.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | M1C2Q4 | 0.0 | M1C2Q4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058477 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400039377 |
Entrez Gene | 102605596 |
Publications ? help Back to Top | |||
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