PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039349
Common NameLOC102606272
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 345aa    MW: 39273.7 Da    PI: 9.6323
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039349genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-20105154154
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                           ++ykGVr+++ +g+W+AeIrd    n  ++r +lg+f+taeeAa a+++a+ +++
  PGSC0003DMP400039349 105 KKYKGVRQRR-WGKWAAEIRDtK--N--KTRLWLGTFDTAEEAALAYDKAAIEIR 154
                           59*****998.**********33..3..4**********************9987 PP
2AP261.61.8e-19261311256
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           +y+GVr++k +g+W+AeIrd      k++r +lg+f+ta eAa a+++a+ +++g+
  PGSC0003DMP400039349 261 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 311
                           8*****998.**********33....36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-27105154No hitNo description
SuperFamilySSF541716.54E-19106158IPR016177DNA-binding domain
PROSITE profilePS5103220.811106163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-26106156IPR001471AP2/ERF domain
SMARTSM003805.5E-29106171IPR001471AP2/ERF domain
PfamPF008472.3E-14106155IPR001471AP2/ERF domain
PRINTSPR003678.9E-11107118IPR001471AP2/ERF domain
PRINTSPR003678.9E-11129145IPR001471AP2/ERF domain
CDDcd000182.44E-29261316No hitNo description
SuperFamilySSF541712.62E-20261317IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-28261316IPR001471AP2/ERF domain
SMARTSM003809.8E-33261324IPR001471AP2/ERF domain
PfamPF008471.8E-14261310IPR001471AP2/ERF domain
PROSITE profilePS5103222.036261318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASKDEHKEN EAVEEPSEIP RDEKSINPVG ESSVVLPRVV RIYMPDSDAT DSSSDEEEKL  60
QGEKSKRHER TCIKEIIIEN GKTRVICKKT SKEKKDIKLF QENAKKYKGV RQRRWGKWAA  120
EIRDTKNKTR LWLGTFDTAE EAALAYDKAA IEIRAMTSKE DLQVKEGVIE PSAIDVVEKS  180
SNQVGEISQV FPRLVRIHVP DHDTTDSSSD EEEKDEEGKS EGHERTCVKE IIIENGKTKV  240
ISKKKSKEKK DLNLMQEDVN KYRGVRRRKW GKWAAEIRDT RKKTRLWLGT FDTALEAALA  300
YDKAAIEIRG ANALTNILKP PAKKNNPIKI NFIVPPLKRQ KADP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-181063171371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7547330.0KJ754733.1 Physalis philadelphica isolate P134 physalis organ size 1 (POS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362748.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_006362749.10.0PREDICTED: ethylene-responsive transcription factor 5-like
RefseqXP_015158628.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9SUE34e-27CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM1C2N10.0M1C2N1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584420.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-13ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]