PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039334
Common NameLOC102599237
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 524aa    MW: 57332.4 Da    PI: 5.0205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039334genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-163683148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ed +lvd+v  +G g+W+++ r+ g+ R++k+c++rw ++l
  PGSC0003DMP400039334 36 KGPWTSAEDVILVDYVMTHGEGNWNAVQRHSGLARCGKSCRLRWANHL 83
                          79******************************************9986 PP
2Myb_DNA-binding53.17.4e-1789132146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE++++v++++++G++ W++ a +++ gRt++++k++w++
  PGSC0003DMP400039334  89 KGAFTPEEEQRIVELHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 132
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9373183IPR017930Myb domain
SuperFamilySSF466898.24E-2933130IPR009057Homeodomain-like
SMARTSM007171.5E-123585IPR001005SANT/Myb domain
PfamPF002494.7E-143683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-233790IPR009057Homeodomain-like
CDDcd001675.56E-103883No hitNo description
PROSITE profilePS5129425.44584138IPR017930Myb domain
SMARTSM007177.7E-1688136IPR001005SANT/Myb domain
PfamPF002493.2E-1589132IPR001005SANT/Myb domain
CDDcd001671.63E-1191132No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2591137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSITSETEER MTSKVDMDSP DEASGGDLGE SVPLKKGPWT SAEDVILVDY VMTHGEGNWN  60
AVQRHSGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEEQRI VELHAKMGNK WARMAVELPG  120
RTDNEIKNYW NTRIKRRQRA GLPIYPPDIS FLVSQNKQNE ELGAFSSADA QNSDVLGINN  180
FEIPAVEFKK LELNHLLYPP QLADIPARSL LNDPVNNFLA QGHRAPYSST YFLSTTYPSK  240
RMRGSESVFS GSNSDLLNSL QYQNDSSLLA QPLGFSSYSH NLTYDDNRSF SSVVPGGHAY  300
LNGNSSSEPT WAMKLELPSL QNQTENWGSP HLALPSLDSV DILIQSPPAG HSESGSLSPS  360
NSGLLDAVLH ESQTMNASHD NSHQGNETSG VAVNNSCPDL KGWDGHPISP LSQFSASVFS  420
EYTPISESSL HEFLSMTTMP GCKIKQEIVD LAPLDEEDDT SNQTIFSSPK TQHANNHLAS  480
KDALISCFFD DCAWDCKQLH AVATSSGQAS GHNSCSWDAM SAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29341375107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1754740.0EF175474.1 Solanum lycopersicum GAMyb-like1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158630.10.0PREDICTED: transcription factor GAMYB-like isoform X2
TrEMBLM1C2L60.0M1C2L6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-76myb domain protein 33
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]