PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039261
Common NameLOC102595615
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 493aa    MW: 51506.8 Da    PI: 8.1569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039261genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.5e-125276327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          ++ C +++rtG+C yG rC+F+H++
  PGSC0003DMP400039261 52 EPDCIYYLRTGFCGYGVRCRFNHPR 76
                          799********************96 PP
2zf-CCCH375.6e-1298122327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C++++rtG Ck+G++Ck++H++
  PGSC0003DMP400039261  98 QPVCQYYMRTGMCKFGASCKYHHPR 122
                           689********************96 PP
3zf-CCCH35.91.3e-11143168227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C++f +tG+Ck+G +CkF+H++
  PGSC0003DMP400039261 143 GEKECSYFVKTGQCKFGVTCKFNHPQ 168
                           7899********************97 PP
4zf-CCCH35.51.6e-11317340427
                           ---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            +C++++++G CkyG++C+++H+p
  PGSC0003DMP400039261 317 QECQYYMKYGDCKYGSSCRYHHPP 340
                           58********************97 PP
5zf-CCCH34.82.8e-11362386327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            + C++fa++G Ck+G++CkF H++
  PGSC0003DMP400039261 362 APVCSHFAQNGVCKFGPSCKFDHPM 386
                           589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0334977IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-95276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.55495123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-698122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-898122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427141169IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5143169IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638313341IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5313340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6316340IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9317340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4319340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784359387IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7359386IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5364384IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MERYSGTQAM EGAPVDPVSE WAVPGGETGL EEPMWQLSLG TGPEPYPERP NEPDCIYYLR  60
TGFCGYGVRC RFNHPRDRTS VLGAMRATGG EYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGVSPAP VTVNVYGYPL RPGEKECSYF VKTGQCKFGV TCKFNHPQPA GAQVPAPAAG  180
PGPGPLTAPA AVPAPHIYPT VQSPVQSAQQ YGVVSGNWPV ARPTLLPGSY IPGTYGSMLL  240
PPGMVPLPGW TPYPAPVNPV PSPSTQLAAA AGPMYGLSQL SPSAPAYTGP YLSVPSHAGP  300
SSSSQKEHAF PERPGLQECQ YYMKYGDCKY GSSCRYHHPP EWSGPKTSFI LSAMGLPLRP  360
GAPVCSHFAQ NGVCKFGPSC KFDHPMGLSY SSSSSSLADM AVAPYPVGSA VGTLAPSSSS  420
SDLRPEVISG SGRDGFSTQV SSMNTSSGSV GSMFSKGGPA SHSGVQQSVQ SSNPSGGSSS  480
SAGHGSEART SN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437120.0AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence.
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342757.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-155C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1C2H30.0M1C2H3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-128C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]