PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400039142
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 269aa    MW: 30772.9 Da    PI: 7.8428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400039142genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09133180455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400039142 133 SHSLAERARREKISKKMKCLQDLVPGC----NKAIGKAGMLDEIINYVQSLQ 180
                           8*************************9....888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.57E-6127184No hitNo description
SuperFamilySSF474597.85E-16127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.977129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17129192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-7133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSILERQRAI FEHLYQCQQQ QTSNSLPNQN LAQLNSLMSE HTMEFSQFQN FPIKIDTQID  60
FGSEKRNWTS KKRKSEFNEE DECKVKRHDG EAGEVQTEMI VKSEKGKNSK ENLEAKNTDF  120
IHVRARRGQA TDSHSLAERA RREKISKKMK CLQDLVPGCN KAIGKAGMLD EIINYVQSLQ  180
KQVEFLSIKL ATSNMNTDNL FAKELPNPTF LQQQGNSNIG VTQMLPQRRE NCLMSFPEAF  240
LDSSNVLALQ HLPNLETDLQ CLFGVRFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400039142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-142HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067911.11e-177transcription factor BEE 2-like
TrEMBLM1C2730.0M1C273_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000581690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-44cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]