PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038896 | ||||||||
Common Name | LOC102604286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 283aa MW: 32114.7 Da PI: 6.4166 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.1 | 5.1e-35 | 40 | 96 | 3 | 59 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++lkcprCds ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvP+Gggr++++ PGSC0003DMP400038896 40 SEQLKCPRCDSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPIGGGRKNKR 96 6899***********************************************977665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-22 | 39 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.5E-31 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.888 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGLNTKLVSI EDDGLDNWTT TTHNTPPEPP SIRRQPPPKS EQLKCPRCDS INTKFCYYNN 60 YNKSQPRHYC KGCKRHWTEG GTLRNVPIGG GRKNKRLRPT DPVDHITGRK HVRLEVNDQR 120 CPLITTTSMT NSITSSILPS VTIRGNSTIT STIDEDIKNL PSYSLPYDIF SNISQDHGNT 180 HFSLIPNSST NTQLSSNVYY NYEHMGKFDS TILEESTITT IMPITSSNDL LSHEPWKVPE 240 TSNYDLIIDE NMSSNYWNWN EFETLSNAAD LNKAWDDLEI KP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038896 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347078.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2-like | ||||
TrEMBL | M1C1N1 | 0.0 | M1C1N1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057782 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6171 | 20 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-28 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038896 |
Entrez Gene | 102604286 |
Publications ? help Back to Top | |||
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