PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038647 | ||||||||
Common Name | LOC102602477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 26244.2 Da PI: 7.9322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 39 | 87 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd ++ ++r++lg+f++ae+Aa+a++ a++ l+g PGSC0003DMP400038647 39 FRGVRKRP-WGKFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDTAARTLRG 87 8*******.**********883....5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.143 | 38 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.81E-31 | 38 | 95 | No hit | No description |
Pfam | PF00847 | 1.3E-11 | 38 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 38 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-22 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-32 | 39 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRRGRAAAAA RQVPATEVPV PAPVAGELNG SGGSKEIRFR GVRKRPWGKF AAEIRDPWKK 60 TRVWLGTFDS AEDAARAYDT AARTLRGPKA KTNFPLPSSH HLPPYPHHHQ FNQSINPNDP 120 FVDSRLYSQD HPIVSQRPTS SSMSSTVESF SGPRPPPRQQ TAASVPSRKY PRSPPVVPDD 180 CHSDCDSSSS VVEDGECDND NIASSSFRKP LPFDLNLPAP MDDFGADAYA DDLHCTALCL 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 39 | 96 | 6 | 64 | ATERF1 |
3gcc_A | 1e-20 | 39 | 96 | 6 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038647 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346195.1 | 1e-177 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 2e-86 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | M1C126 | 1e-175 | M1C126_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057443 | 1e-176 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-28 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038647 |
Entrez Gene | 102602477 |
Publications ? help Back to Top | |||
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