PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038522
Common NameLOC102588337
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 432aa    MW: 48910.4 Da    PI: 8.4919
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038522genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4341.1e-132504312374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl...... 83 
                           ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  +s++ + ++p et++++ss++l + +l      
  PGSC0003DMP400038522  50 RQLLISCAELISRSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRyISSTTNHFMTPVETTPTDSSSSLPSSSLaliqss 138
                           89****************************************************55556666679999998885555555533344456 PP

                  GRAS  84 ...fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                              +++v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+rLakf
  PGSC0003DMP400038522 139 ylsLNQVTPFIRFTQLTANQAILEAINGNhQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKF 222
                           678*************************9899***********************9.899**********....*************** PP

                  GRAS 169 Aeelgvpfefnvl...vakrledle...leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                           A++lg++f+f++l     +r +d +   ++++ + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++Pk+v+++e+ea+hn++
  PGSC0003DMP400038522 223 AHSLGLRFQFHPLyiaNNNRDHDEDpsiISSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRVKSMNPKIVTIAEKEANHNHP 307
                           *************75433344555511145556777****************99999999....************************* PP

                  GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                            Fl+rf+eal+yy+a+fdslea+lp+ s+er++vE++++greiv++va+eg++r+erhe++++W+ +l+++GF++v+ls +a +qakll
  PGSC0003DMP400038522 308 LFLQRFIEALDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLL 396
                           ***************************************************************************************** PP

                  GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           lr ++ s+gy++  +s+s++lgW+++pL+s+S+Wr
  PGSC0003DMP400038522 397 LRLHYpSEGYQLGVSSNSFFLGWQNQPLFSISSWR 431
                           **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.04223410IPR005202Transcription factor GRAS
PfamPF035143.9E-13050431IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLGSFGSSSS QSHPHHDEES SDHHQRRRFT ATTTTITTTT TTTSPAIQIR QLLISCAELI  60
SRSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR LNRYISSTTN HFMTPVETTP  120
TDSSSSLPSS SLALIQSSYL SLNQVTPFIR FTQLTANQAI LEAINGNHQA IHIVDFDINH  180
GVQWPPLMQA LADRYPAPTL RITGTGNDLD TLRRTGDRLA KFAHSLGLRF QFHPLYIANN  240
NRDHDEDPSI ISSIVLLPDE TLAINCVFYL HRLLKDREKL RIFLHRVKSM NPKIVTIAEK  300
EANHNHPLFL QRFIEALDYY TAVFDSLEAT LPPGSRERMT VEQVWFGREI VDIVAMEGDK  360
RKERHERFRS WEVMLRSCGF SNVALSPFAL SQAKLLLRLH YPSEGYQLGV SSNSFFLGWQ  420
NQPLFSISSW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-615643026378Protein SCARECROW
5b3h_A1e-615643025377Protein SCARECROW
5b3h_D1e-615643025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038522
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097430.0FJ809743.1 Solanum pennellii chromosome 7 clone C07SpCP018I014.P4G10, complete sequence.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346062.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLM1C0Q70.0M1C0Q7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000572650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-128GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]