PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038401 | ||||||||
Common Name | LOC102591653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 60137 Da PI: 5.0683 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 445.3 | 4.3e-136 | 168 | 537 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +e+L++cA+a+++++l a++l+++l++ +s g+p+qRl ay++e+L arla+s+s++ykal+++e + s+e +++++l++e++P+ PGSC0003DMP400038401 168 KEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPLQRLGAYMLEGLVARLASSGSSIYKALRCKEPT---SVELFSYMHLLYEICPY 253 679*****************************************************************9...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 +kf++l aN aI++a++ e+ +HiiDf+i qG QW++L++aLa+Rp+gpp++RiTg+++++s + +e +g+rL+++A++++vpfe PGSC0003DMP400038401 254 FKFGYLSANGAIVDAMKDENSIHIIDFQIAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSIAASCNVPFE 342 ***********************************************************998899999********************* PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f++ v+ ++ d+e+e+L+v pgE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+++F+ rfle+l+yy + PGSC0003DMP400038401 343 FHP-VSASCPDIEIEHLKVLPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTAQFFPRFLETLNYYLS 430 ***.799********************************************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +f+s+++ lpr+++eri+vE+++l+reivn++aceg+er+erhe le+Wr+r+ +aGFkp+pls+++++++k+ll+++++ y+++e++ PGSC0003DMP400038401 431 VFESIDVALPRDHKERINVEQHCLAREIVNILACEGTERVERHELLERWRSRFAMAGFKPYPLSSSVNATIKTLLENYYQS-YTLNERN 518 *******************************************************************************55.******* PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g l+lgW++r Lv+ +aW+ PGSC0003DMP400038401 519 GVLYLGWMNRDLVASCAWK 537 ******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.982 | 141 | 518 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-133 | 168 | 537 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MRPSQNPEDI NEFNRFYNQP IEYQESYFLP SINNPNNNQS YYADVSALKP DQHYYVESST 60 GNSSELVSDS PPIVNFNPMM QQGSDSCRSD MHHSPDDTFQ SSGNSSCYTS DVTDLKHKLR 120 ELETAMLGPD SESMESYNTI PAAAANQVSS ESDKLVGMME MMPSGDVKEV LIACAKAIAE 180 NNLITAEWLM SELRTVVSVC GSPLQRLGAY MLEGLVARLA SSGSSIYKAL RCKEPTSVEL 240 FSYMHLLYEI CPYFKFGYLS ANGAIVDAMK DENSIHIIDF QIAQGSQWIT LIHALAARPG 300 GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSIAASCNVP FEFHPVSASC PDIEIEHLKV 360 LPGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES NTNTAQFFPR 420 FLETLNYYLS VFESIDVALP RDHKERINVE QHCLAREIVN ILACEGTERV ERHELLERWR 480 SRFAMAGFKP YPLSSSVNAT IKTLLENYYQ SYTLNERNGV LYLGWMNRDL VASCAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-67 | 174 | 536 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-67 | 174 | 536 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-67 | 174 | 536 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038401 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346161.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | M1C0F3 | 0.0 | M1C0F3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057111 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038401 |
Entrez Gene | 102591653 |
Publications ? help Back to Top | |||
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