PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038400
Common NameLOC102591653
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 538aa    MW: 60137 Da    PI: 5.0683
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038400genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.34.3e-1361685372374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           +e+L++cA+a+++++l  a++l+++l++ +s  g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e +++++l++e++P+
  PGSC0003DMP400038400 168 KEVLIACAKAIAENNLITAEWLMSELRTVVSVCGSPLQRLGAYMLEGLVARLASSGSSIYKALRCKEPT---SVELFSYMHLLYEICPY 253
                           679*****************************************************************9...9**************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                           +kf++l aN aI++a++ e+ +HiiDf+i qG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL+++A++++vpfe
  PGSC0003DMP400038400 254 FKFGYLSANGAIVDAMKDENSIHIIDFQIAQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSIAASCNVPFE 342
                           ***********************************************************998899999********************* PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f++ v+ ++ d+e+e+L+v pgE laVn++l lh+++desv ++++rd++L++vkslsPk+v++veqe+++n+++F+ rfle+l+yy +
  PGSC0003DMP400038400 343 FHP-VSASCPDIEIEHLKVLPGEPLAVNFALVLHHMPDESVGTQNHRDRLLRMVKSLSPKIVTLVEQESNTNTAQFFPRFLETLNYYLS 430
                           ***.799********************************************************************************** PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           +f+s+++ lpr+++eri+vE+++l+reivn++aceg+er+erhe le+Wr+r+ +aGFkp+pls+++++++k+ll+++++  y+++e++
  PGSC0003DMP400038400 431 VFESIDVALPRDHKERINVEQHCLAREIVNILACEGTERVERHELLERWRSRFAMAGFKPYPLSSSVNATIKTLLENYYQS-YTLNERN 518
                           *******************************************************************************55.******* PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                           g l+lgW++r Lv+ +aW+
  PGSC0003DMP400038400 519 GVLYLGWMNRDLVASCAWK 537
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.982141518IPR005202Transcription factor GRAS
PfamPF035141.5E-133168537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MRPSQNPEDI NEFNRFYNQP IEYQESYFLP SINNPNNNQS YYADVSALKP DQHYYVESST  60
GNSSELVSDS PPIVNFNPMM QQGSDSCRSD MHHSPDDTFQ SSGNSSCYTS DVTDLKHKLR  120
ELETAMLGPD SESMESYNTI PAAAANQVSS ESDKLVGMME MMPSGDVKEV LIACAKAIAE  180
NNLITAEWLM SELRTVVSVC GSPLQRLGAY MLEGLVARLA SSGSSIYKAL RCKEPTSVEL  240
FSYMHLLYEI CPYFKFGYLS ANGAIVDAMK DENSIHIIDF QIAQGSQWIT LIHALAARPG  300
GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSIAASCNVP FEFHPVSASC PDIEIEHLKV  360
LPGEPLAVNF ALVLHHMPDE SVGTQNHRDR LLRMVKSLSP KIVTLVEQES NTNTAQFFPR  420
FLETLNYYLS VFESIDVALP RDHKERINVE QHCLAREIVN ILACEGTERV ERHELLERWR  480
SRFAMAGFKP YPLSSSVNAT IKTLLENYYQ SYTLNERNGV LYLGWMNRDL VASCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6717453626378Protein SCARECROW
5b3h_A2e-6717453625377Protein SCARECROW
5b3h_D2e-6717453625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346161.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLM1C0F30.0M1C0F3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000571110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]