PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038263 | ||||||||
Common Name | LOC102585581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 39187.9 Da PI: 7.5268 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.4 | 4.1e-51 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deel+++yL kkv++++ + + + evd++k+ePw++p+ + + k+wyf+s+rd+kyatg r+nrat sgyWkatgk PGSC0003DMP400038263 14 LPPGFRFHPRDEELICDYLMKKVDQSTDQQQYPlLIEVDLNKSEPWEIPEVACVGGKDWYFYSQRDRKYATGLRTNRATVSGYWKATGK 102 79************************9766555599*************7666789********************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++++ kg+lvg++ktLvfy+grapkg+k+dWvmhe+rl PGSC0003DMP400038263 103 DRAIIR-KGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRL 141 *****9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-59 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.218 | 14 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-26 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MSNNSSLSMV ESKLPPGFRF HPRDEELICD YLMKKVDQST DQQQYPLLIE VDLNKSEPWE 60 IPEVACVGGK DWYFYSQRDR KYATGLRTNR ATVSGYWKAT GKDRAIIRKG SLVGMRKTLV 120 FYQGRAPKGR KSDWVMHEFR LDEGPLSNIR SQISSLKEDW VLCRVFHKNK ELLATKQGIG 180 SNNIYYDNDT ISSSSLPPLM DPYITFDQIN PNNNINMNEL YYEQVPCFSI FTPNQTFTSS 240 HSHHLPATTN AIGSTPITTA YGGFPADIGN YLNATATSST CDNKVIKAVL SHLSTKNNIM 300 EGNSNNNNII NPAQNIVNIK GGNSPSFGEG SSETSFLSEV GYPTIWNNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-51 | 10 | 171 | 11 | 171 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038263 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346053.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-110 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M1C029 | 0.0 | M1C029_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056916 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-110 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038263 |
Entrez Gene | 102585581 |