PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038123
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 375aa    MW: 42308.6 Da    PI: 9.0373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038123genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13198243454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L  ++eY+ sL
  PGSC0003DMP400038123 198 HHMISERRRREKLNDSFQLLRSLLPPG-----TKKDKASVLSSTTEYLTSL 243
                           68899********************97.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-11194248No hitNo description
SuperFamilySSF474598.9E-18195262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-17197265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-11198243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGMKNLFPEY FSTRSHHQTL LTNIDQNRPS PSSSFSLDSP GEYSSLLFNP PQTDAFPEQT  60
IRPVSATAMP FHQQQPIDHQ TLTQLRGSIQ FPGVETEDAA LTRAYLAVMT SPSSSSSSHQ  120
SRENINVPTD YHYQKATAFR RFRPGLGRPS NVQIGTSRTI RRENMLRRSI TFFRNLNMMR  180
RQEQIQANQR APTSTQVHHM ISERRRREKL NDSFQLLRSL LPPGTKKDKA SVLSSTTEYL  240
TSLKGQVEEL SKKNEMLKAE LDKPEDMMKS DAISSCDGNE RVAVEITNVS ESSLSESRVV  300
KLQVSVRGEC NVLDLATRSL EFLKTQNDLT LESVAANTRP SMVTHITLRI RIQGSEWDES  360
GFEEAVKRVV DDLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202207ERRRRE
2203208RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400038123
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357705.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLM1BZT00.0M1BZT0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000566850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-48bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]