PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400038028 | ||||||||
Common Name | LOC102604429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 18179.4 Da PI: 7.5719 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 24 | 67 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr+++ +gr++AeIr p++ ++r++lg+f+taeeAa a++ PGSC0003DMP400038028 24 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 67 69********.**********933...5******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.82E-29 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 6.9E-12 | 24 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-18 | 25 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.653 | 25 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-26 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-29 | 25 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MENITNIPKL HVRNLVRRSS RHSTKYHGVR RRPWGRYAAE IRNPNTKQRH WLGTFDTAEE 60 AALAYDISSI TFCGIESART NFVYPFSSFP SPYNNSPAPP SPPPRPPPPP PPSTPELEVV 120 ENNCMKIEMN DDINDDDESL VIASILQSFR YTNTLDKLAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 25 | 82 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400038028 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914525 | 0.0 | CU914525.3 S.lycopersicum DNA sequence from clone LE_HBa-149O17 on chromosome 4, complete sequence. | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354089.1 | 1e-115 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | M1BZK0 | 1e-114 | M1BZK0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056527 | 1e-115 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 8e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400038028 |
Entrez Gene | 102604429 |
Publications ? help Back to Top | |||
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