PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400037860 | ||||||||
Common Name | LOC102593464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 299aa MW: 33538.5 Da PI: 9.522 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.7 | 9.9e-27 | 92 | 146 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+a+e+L G +kA+P++ilelm+ +gLt+++++SHLQkYR + PGSC0003DMP400037860 92 KVKVDWTPELHRKFVKAIEKL-GVDKAVPSRILELMSTHGLTRHNIASHLQKYRAH 146 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.278 | 89 | 148 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 90 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.43E-17 | 90 | 149 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-25 | 92 | 146 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-8 | 95 | 144 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MLALSSSLSY KNERENYDLF QDFPHGNLIN TIDFDDLFDE INDGDLLPDF EIFGEFSVIS 60 CEESATHGNM KFKSKEAKKS SSQIKNPQGK RKVKVDWTPE LHRKFVKAIE KLGVDKAVPS 120 RILELMSTHG LTRHNIASHL QKYRAHRKHL LAREAEAVSL SHKKQMYSGT AMIGGGGKRI 180 LMNPWPSPPT MGFPPMAHHI KPLHVWGHPH VNNSFWHPHY QRRFAAPLMV PGIPPPHPII 240 RVDTISSDLH PSNESIDAAI EDVLAKPQLP LPIGLKPPSI DSVLNELQRQ GITKIPPT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-14 | 89 | 150 | 2 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400037860 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF807948 | 0.0 | JF807948.1 Solanum phureja golden 2-like 2 transcription factor (GLK2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160308.1 | 0.0 | PREDICTED: transcription activator GLK1-like isoform X2 | ||||
Swissprot | Q9SIV3 | 3e-60 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | M1BZ72 | 0.0 | M1BZ72_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400056255 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-58 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400037860 |
Entrez Gene | 102593464 |