PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037768
Common NameLOC102582834
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 560aa    MW: 62544.9 Da    PI: 5.6283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037768genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.35.5e-1271895581373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA+a+++++l   + l+a+ +  +s +gdp+qRl ay++e+L ar   s++++y++l+++e +    ++ ++++ +++e++P
  PGSC0003DMP400037768 189 LKQLLIACARALAENKLDDFEILVAKARSVVSVTGDPIQRLGAYIVEGLVARKELSGTSIYRSLKCKEPA---GKDLFSYMYILYEICP 274
                           689***************************************************9**************9...99999999******** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +lkf++++aN aI+ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l ++++rL+ + e++++ +
  PGSC0003DMP400037768 275 YLKFGYMAANGAIVEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPYVRITGIDDPVSQyaRGDGLAAVAKRLSAISEKFNIAV 363
                           *************************************************************999999********************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef++ v     +++ ++L+v+pgEalaVn+ lqlh+++desv+++++rd +++++ksl Pk+v++veqe+++n+++Fl rf+eal+yy 
  PGSC0003DMP400037768 364 EFHA-VPVFAPEITWDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLIRMIKSLCPKIVTLVEQESNTNTAPFLPRFVEALDYYH 451
                           ****.68889999**************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+f+s+++++pr+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ +k l+++++ + y++ e+
  PGSC0003DMP400037768 452 AMFESIDVTIPRDMKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFQQYPLSSYVNSVIKDLMKRYS-EHYTLVEK 539
                           ********************************************************************************.55****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaW 373
                           +g+++lgWk+r+Lvs+SaW
  PGSC0003DMP400037768 540 DGAMLLGWKERNLVSASAW 558
                           ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.977163540IPR005202Transcription factor GRAS
PfamPF035141.9E-124189558IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MDSDHFVGYD VTGSDLSYSS YPTVSPLENR PFGTSKFDSG NSPLANYFNS ETFTTVSAYQ  60
EQHSCTENLS GATSSSDSSL DYNQYFHRPS PSEDHLPEAP NSRNMKHTLL QLESALMGPD  120
EEAMKSSRYL GENMGAQTSG QRYKAWNKEA QVVHQPQQSL VSILNGIQSG KRDNVMEDLP  180
LQGVPSSNLK QLLIACARAL AENKLDDFEI LVAKARSVVS VTGDPIQRLG AYIVEGLVAR  240
KELSGTSIYR SLKCKEPAGK DLFSYMYILY EICPYLKFGY MAANGAIVEA CRNEDRIHII  300
DFQIAQGTQW MTLLQALAAR PGGAPYVRIT GIDDPVSQYA RGDGLAAVAK RLSAISEKFN  360
IAVEFHAVPV FAPEITWDML DVRPGEALAV NFPLQLHHTP DESVDVNNPR DGLIRMIKSL  420
CPKIVTLVEQ ESNTNTAPFL PRFVEALDYY HAMFESIDVT IPRDMKERIN VEQHCLARDI  480
VNVIACEGKE RVERHELLGK WKSRFMMAGF QQYPLSSYVN SVIKDLMKRY SEHYTLVEKD  540
GAMLLGWKER NLVSASAWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-631865581374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037768
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612450.0GQ261245.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI039 mRNA, complete cds.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363507.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM1BYZ50.0M1BYZ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000561200.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]