PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400037646 | ||||||||
Common Name | LOC102602930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25778.3 Da PI: 6.0549 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 74 | 120 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f+eL ++l + +++K++K+ iL Av+ + +L PGSC0003DMP400037646 74 KAHREKMRRDKLNDRFQELSSILEPG---KQPKMDKSVILGDAVRMVVQL 120 678**********************9...9**************987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.665 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.54E-8 | 73 | 125 | No hit | No description |
Pfam | PF00010 | 4.9E-10 | 73 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-9 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-13 | 75 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-14 | 75 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:1.20.5.170 | 5.1E-4 | 134 | 169 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAETEEDGSN WLIELGLMED LPSLEPNAQW PSNAFSIPNN LSSGLEDSYG NSDSLKECGS 60 KKRVRSGACA SDSKAHREKM RRDKLNDRFQ ELSSILEPGK QPKMDKSVIL GDAVRMVVQL 120 RDEAQKLKES NNNLQEKVIE LKAEKNELRD EKQKLKAEKD KLEQHLKAMN TQPGFLPHPP 180 AMPSPFSAPH QVFASKMMPY LGYPGIPMWQ FVPPAAVDTS EDHSLRPPVA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400037646 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC158307 | 0.0 | KC158307.1 Solanum lycopersicum AFLP fragment TGG1, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365882.1 | 1e-169 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 5e-82 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M1BYR3 | 1e-168 | M1BYR3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055907 | 1e-169 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400037646 |
Entrez Gene | 102602930 |