PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037090
Common NameLOC102583173
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 331aa    MW: 37677.1 Da    PI: 7.5186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037090genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          rg+W++eEd +l+ +++q+G+g +W t ++++g++R++k+c++rw++yl
  PGSC0003DMP400037090 14 RGPWSPEEDSKLKAYIEQHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                          89*********************************************97 PP

2Myb_DNA-binding38.92e-1269111246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PGSC0003DMP400037090  69 GEFTDEEDNIICTLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                           78*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.976962IPR017930Myb domain
SuperFamilySSF466894.05E-2711109IPR009057Homeodomain-like
SMARTSM007174.6E-131364IPR001005SANT/Myb domain
PfamPF002498.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-251569IPR009057Homeodomain-like
CDDcd001678.50E-101662No hitNo description
PROSITE profilePS5129421.84263117IPR017930Myb domain
SMARTSM007175.1E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2470117IPR009057Homeodomain-like
CDDcd001673.23E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIE QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDNIIC TLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLLC  120
NKQRKDHRPR TGSYINHNKL EMMKEHENFF ATHQTINNTY SWPSQQILFS TLIAPQNHDL  180
AESSSANSHN FQYSTTDQVY FSQDQLCQIS STNQLASMNL VNGNTCNSSV MISNGYYPSN  240
GVVINNGLQE YNNYNSVGLD HDALNSTHSQ QVDKSVLEMV NSSTISTTSQ DQSTSWEELS  300
PLVNYPPSVF ETVSPYYVFE EQRYMGLLKQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363795.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-78RAX3_ARATH; Transcription factor RAX3
TrEMBLM1BXE90.0M1BXE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000551480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-80myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]