PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400037029
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 314aa    MW: 35181.8 Da    PI: 6.2151
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400037029genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.45.5e-371569761
                zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          +cprC stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++ 
  PGSC0003DMP400037029 15 TCPRCGSTNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRG 69
                          7**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088428.5561468IPR003851Zinc finger, Dof-type
PfamPF027011.5E-311568IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-221658IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101652IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEREIWKSNV ELVPTCPRCG STNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPIG  60
GGCRKSRRGK SSSSIIHQHG LISRNLGHGV CLNHTNIDHN QSNSTNSLDH HGPTIDLALV  120
YSNFLNSDNS KPSQLENHQN LELSDNLLLP NQEGVLVAPS FEFSTMIDME FMTSNLGQES  180
RLIGDGVYFS GIHDEKHNIM NHSDVHDDHY TNMNNVNGNN IINHDQLGNN YMELPPLPCE  240
EMMWSNNSHG HHDMVFPNDI LSTSHNLSAG GPESEPELEP KLAIEDPSHD HNANIANDGS  300
HFNLSNFGNI FRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400037029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458170.0AC245817.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072421.10.0dof zinc finger protein DOF3.5-like
TrEMBLM1BXA00.0M1BXA0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000550520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129631317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-35Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]