PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400036746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18108 Da PI: 8.394 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.3 | 2.2e-12 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C++ PGSC0003DMP400036746 7 CSGCRTMLLYPRGASNVCCAVCNA 30 **********************97 PP | |||||||
2 | zf-LSD1 | 45.2 | 1.5e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA sVRC++C+tV PGSC0003DMP400036746 46 CGGCRTLLMHPRGANSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 39.1 | 1.2e-12 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr +L+YP GApsV+Ca+C+ PGSC0003DMP400036746 84 CGNCRMMLMYPCGAPSVKCAVCHY 107 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.2E-13 | 4 | 32 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.4E-11 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.8E-17 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.9E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.0E-12 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MQSQLMCSGC RTMLLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAN 60 SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAVCHYITN VNAGDGRAHA 120 SLNPPNGTAT PASGSSSTAK ARSQNQTVVV QNPMSVDESG KLVSNVVVGV TTTS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400036746 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT036491 | 0.0 | KT036491.1 Solanum tuberosum cultivar Kexin-4 LSD1-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353029.1 | 1e-123 | PREDICTED: protein LSD1 | ||||
Refseq | XP_006353030.1 | 1e-123 | PREDICTED: protein LSD1 | ||||
Refseq | XP_015166652.1 | 1e-123 | PREDICTED: protein LSD1 | ||||
Swissprot | Q6ASS2 | 3e-66 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | M1BWM1 | 1e-121 | M1BWM1_SOLTU; LSD1-like protein | ||||
STRING | PGSC0003DMT400054616 | 1e-122 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 6e-55 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400036746 |
Entrez Gene | 102606105 |
Publications ? help Back to Top | |||
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