PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400036615
Common NameLOC102601513
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91997 Da    PI: 6.3799
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400036615genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18563357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++p+  +r +L +++    +++ +q+kvWFqNrR +ek+
  PGSC0003DMP400036615  5 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 63
                          6789*****************************************************97 PP
2bZIP_122.13.3e-0757981859
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
                          rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v+ l
  PGSC0003DMP400036615 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 98
                          9*************************************9977 PP
3START1717.7e-541553612203
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e++ ka+ ++  Wv++  +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++  ++l+vi +g  
  PGSC0003DMP400036615 155 IAEETLTEFLGKATGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDILNVIPTGng 242
                           6899******************************************************.8888888888******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++  p      s+vRa++lpSg+li+p+++g+s +++v+h+dl+
  PGSC0003DMP400036615 243 GTIELIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGGPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLD 331
                           ************************************************9999999********************************** PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrq 203
                           + +++++lr+l++s+ + ++k+++a++++ 
  PGSC0003DMP400036615 332 ACSVPEVLRPLYESSKILAQKMTMAAFRYI 361
                           *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.451164IPR001356Homeobox domain
SMARTSM003891.5E-15268IPR001356Homeobox domain
CDDcd000869.11E-16565No hitNo description
SuperFamilySSF466895.99E-17569IPR009057Homeodomain-like
PfamPF000462.2E-15563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-18763IPR009057Homeodomain-like
CDDcd146861.09E-55793No hitNo description
PROSITE profilePS5084825.976145373IPR002913START domain
CDDcd088756.93E-70149365No hitNo description
Gene3DG3DSA:3.30.530.202.1E-19153344IPR023393START-like domain
SMARTSM002341.4E-50154364IPR002913START domain
PfamPF018522.6E-51155362IPR002913START domain
SuperFamilySSF559617.0E-34155366No hitNo description
PfamPF086708.0E-46689834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TQVNSTTTDT  120
CCESVVVSDQ QQQQNPIPQH HPQRDANSPA GLLAIAEETL TEFLGKATGT AVDWVQMIGM  180
KPGPESIGIV AVSRNCNGVA ARACGLVSLE PMKVAEILKD RPSWYRDCRC LDILNVIPTG  240
NGGTIELIYL QTYAPTTLAP ARDFWTLRYT TSLEDGSLVI CERSLTSNTG GPVGPPATSS  300
VRAKMLPSGF LIRPCEGGGS IIHIVDHIDL DACSVPEVLR PLYESSKILA QKMTMAAFRY  360
IRQIAQETSG EIQYAGGRQP AVLRAFSQRL CRGFNNAVSG FIDDGWTIMG SDGVDDVTIA  420
VNSSPSKFLD AQYNTLSILP TFGGVLCARA SMLLQDVCPA LLVRFLREHR SEWADYGVDA  480
YSSASLKASP YAVPCARPGV FPSSQVILPL AQTVEHEEFL EVVRLEGHAF SPEDIALSRD  540
MYLLQLCSGV EENATGACAQ LVFAHIDESF GDDAPLLPSG FSVIPLEPKS DSPSAARTLD  600
LASTLEARTG GTRLAGEVEG RSYNHRSVLT IAFQFAFENH YRENVAAMAR QYVRSIVGSV  660
QRVAMAIAPS RLCSQLTPKS FPGSPEAVTL ARWICRSYKN HTGGELLQVE SQAAGDAVLK  720
QLWHHTDSIM CCSVKMNDSA VFSFSNQAGL DMLETTLIAL QDIMLDKILD EAGRKVLLSE  780
FPKIMQQGFA YLPAGLCVSS MGRPVSYEQA VAWKVLNDDN SSHCLAFMFT NWSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400036615
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353018.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1
RefseqXP_006353019.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLM1BWB10.0M1BWB1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000544210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  4. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  5. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  6. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  7. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  8. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  9. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  10. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]