PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400036614

Common Name

LOC102601513

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 593aa MW: 65249.5 Da PI: 6.1998

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400036614	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.3e-18	5	63	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r +L +++ +++ +q+kvWFqNrR +ek+ PGSC0003DMP400036614 5 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP
2	bZIP_1	22.7	2.2e-07	57	98	18	59
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v+ l PGSC0003DMP400036614 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 98 9*************************************9977 PP
3	START	171.9	4e-54	155	361	2	203
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aee+++e++ ka+ ++ Wv++ +++g+e++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ ++l+vi +g PGSC0003DMP400036614 155 IAEETLTEFLGKATGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDILNVIPTGng 242 6899****************************************************.8888888888**************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++ p s+vRa++lpSg+li+p+++g+s +++v+h+dl+ PGSC0003DMP400036614 243 GTIELIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGGPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLD 331 ********************************************9999999****************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 174 grlphwllrslvksglaegaktwvatlqrq 203 + +++++lr+l++s+ + ++k+++a++++ PGSC0003DMP400036614 332 ACSVPEVLRPLYESSKILAQKMTMAAFRYI 361 ***********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.451	1	64	IPR001356	Homeobox domain
SMART	SM00389	1.5E-15	2	68	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-15	5	63	IPR001356	Homeobox domain
CDD	cd00086	4.88E-16	5	65	No hit	No description
SuperFamily	SSF46689	3.81E-17	5	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-18	7	63	IPR009057	Homeodomain-like
CDD	cd14686	6.96E-6	57	93	No hit	No description
PROSITE profile	PS50848	25.976	145	373	IPR002913	START domain
CDD	cd08875	9.16E-72	149	365	No hit	No description
Gene3D	G3DSA:3.30.530.20	1.1E-19	153	345	IPR023393	START-like domain
SMART	SM00234	1.4E-50	154	364	IPR002913	START domain
SuperFamily	SSF55961	3.57E-34	155	366	No hit	No description
Pfam	PF01852	1.4E-51	155	362	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR 60 EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TQVNSTTTDT 120 CCESVVVSDQ QQQQNPIPQH HPQRDANSPA GLLAIAEETL TEFLGKATGT AVDWVQMIGM 180 KPGPESIGIV AVSRNCNGVA ARACGLVSLE PMKVAEILKD RPSWYRDCRC LDILNVIPTG 240 NGGTIELIYL QTYAPTTLAP ARDFWTLRYT TSLEDGSLVI CERSLTSNTG GPVGPPATSS 300 VRAKMLPSGF LIRPCEGGGS IIHIVDHIDL DACSVPEVLR PLYESSKILA QKMTMAAFRY 360 IRQIAQETSG EIQYAGGRQP AVLRAFSQRL CRGFNNAVSG FIDDGWTIMG SDGVDDVTIA 420 VNSSPSKFLD AQYNTLSILP TFGGVLCARA SMLLQDVCPA LLVRFLREHR SEWADYGVDA 480 YSSASLKASP YAVPCARPGV FPSSQVILPL AQTVEHEEFL EVVRLEGHAF SPEDIALSRD 540 MYLLQLCSGV EENATGACAQ LVFAHIDESF GDDAPLLPSG FSVIPLEPKS VK*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TQVNSTTTDT  120
CCESVVVSDQ QQQQNPIPQH HPQRDANSPA GLLAIAEETL TEFLGKATGT AVDWVQMIGM  180
KPGPESIGIV AVSRNCNGVA ARACGLVSLE PMKVAEILKD RPSWYRDCRC LDILNVIPTG  240
NGGTIELIYL QTYAPTTLAP ARDFWTLRYT TSLEDGSLVI CERSLTSNTG GPVGPPATSS  300
VRAKMLPSGF LIRPCEGGGS IIHIVDHIDL DACSVPEVLR PLYESSKILA QKMTMAAFRY  360
IRQIAQETSG EIQYAGGRQP AVLRAFSQRL CRGFNNAVSG FIDDGWTIMG SDGVDDVTIA  420
VNSSPSKFLD AQYNTLSILP TFGGVLCARA SMLLQDVCPA LLVRFLREHR SEWADYGVDA  480
YSSASLKASP YAVPCARPGV FPSSQVILPL AQTVEHEEFL EVVRLEGHAF SPEDIALSRD  540
MYLLQLCSGV EENATGACAQ LVFAHIDESF GDDAPLLPSG FSVIPLEPKS VK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:17900520, ECO:0000269\|PubMed:9747806}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400036614

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006353018.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1
Refseq	XP_006353019.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X1
Swissprot	O04292	0.0	ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBL	M1BWB1	0.0	M1BWB1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400054421	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400036614
Entrez Gene	102601513

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785]