PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400036180
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 320aa    MW: 36510.1 Da    PI: 4.5655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400036180genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09201246555
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  PGSC0003DMP400036180 201 QSIAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATFKYIKLLQ 246
                           57889*******************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-11193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-10194248No hitNo description
Gene3DG3DSA:4.10.280.108.4E-11195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.04196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-8202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MASVSYYSAS KLEPNVEEFN SEEMMTLLFD FNYDVEHTFS DENQDQDCYF DPDEFILPVE  60
TIDNSCFMSE YSVFEKQQKV FQDNLITPST HNSCFMPEYS AFESTPKRQK VFQDDFLPNS  120
TIITPATHNS SFMPEYSVYE KQQKVFQGLF NEGFVPNPPM FEDFASYSLP EIPMPVFSSN  180
NAGVIAKKGA SNNNEKKMSA QSIAARQRRK KISDKTQELG KLIPGGHRMN TAEMLQATFK  240
YIKLLQAQAG LLAFMGSYQE NEKSFETSYL HKLVGSSLVQ EKLYSTENCL VPKVFLQALE  300
NNQEFQNSQV LEEVKTLIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400036180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-167HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084372.11e-178transcription factor bHLH52-like
RefseqXP_015170083.11e-178PREDICTED: transcription factor bHLH52-like
TrEMBLM1BV970.0M1BV97_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000536510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-22bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]