PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035842
Common NameLOC102591370
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 371aa    MW: 40579.2 Da    PI: 5.685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035842genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-21166216256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  PGSC0003DMP400035842 166 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 216
                           59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-34165225No hitNo description
PROSITE profilePS5103223.235166223IPR001471AP2/ERF domain
SMARTSM003805.8E-38166229IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23166224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-32166224IPR001471AP2/ERF domain
PRINTSPR003673.6E-11167178IPR001471AP2/ERF domain
PfamPF008471.9E-14167216IPR001471AP2/ERF domain
PRINTSPR003673.6E-11189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAAAIDIYSS SNFSDPLTEE LMKALEPFMK GASCSSFSSS SPSSSSSSSF YTFGEPNLYT  60
DFCAIPSTAT QMFSQGYSCF NNMGVAETGS IGLNHLTPSQ ILQIQAQIQF QNQQQLLQLH  120
QQQQSLGLLT PTSTYSKNLN STNFLGMKPV PMKQTGGASS QKATKLYRGV RQRHWGKWVA  180
EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGEFARL NFPHLRHQLN NEFSPLHSSV  240
DAKLQAICQS LANPKSDDLC SKSNSKPRKS KTAAAAVPVD SNSAQESSSK SEITIDDSLK  300
GEFSYPENAN IKIEASSSSP APSEESSSSP ESDITFLDFA EPPSFDESEN FFLPKYPSVE  360
IDWAALCNLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22165223160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035842
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355363.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
TrEMBLM1BUH60.0M1BUH6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.15e-52ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]