PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035837
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family EIL
Protein Properties Length: 298aa    MW: 34880.7 Da    PI: 4.3877
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035837genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3129.74.5e-40211341116
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa...tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                           ++lk+rmw d+m+++ lk+    +  ++e +    ++++s+  +eq+rrkkmsraQD+iLkYM+k+me+c+ qGfvYgi+pekgkpv+g
  PGSC0003DMP400035837  21 DDLKRRMWEDRMRMQILKRDMIINSTSEELSldqESEEESEAKQEQSRRKKMSRAQDSILKYMVKIMEICKGQGFVYGIVPEKGKPVTG 109
                           79*************9998887777777766443445566699********************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3  87 asdsLraWWkekvefdrngpaaiskyqakn 116
                           +sdsLr+WWk+kv+      + isk++ ++
  PGSC0003DMP400035837 110 SSDSLREWWKDKVRI-----ISISKEEEDD 134
                           *************86.....5577774444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-3921124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEPLSPINSE EIIEDEEINY DDLKRRMWED RMRMQILKRD MIINSTSEEL SLDQESEEES  60
EAKQEQSRRK KMSRAQDSIL KYMVKIMEIC KGQGFVYGIV PEKGKPVTGS SDSLREWWKD  120
KVRIISISKE EEDDEYLALR RKEKRKGTVF ESDIDIDDML YQNLNCVQSE LGVGFYRTMN  180
EQQSVRGEDE SLNMFMSNFT SLIGRQPRPH EEIMVGDDHH GEHDWVNMEI KRTFENYHIA  240
QNANGGSVEE NFQGFWGDNN NVLHYGNIMN LNDTPKENEQ HQSPLSVWDL AYEDTSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRKEKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035837
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-106HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355383.11e-126PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLM1BUH10.0M1BUH1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531471e-125(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.14e-32EIL family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]