PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400035655 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 134aa MW: 14777 Da PI: 3.8665 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.9 | 2.3e-11 | 6 | 37 | 1 | 32 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee 32 lppGfrFhPtd+elv +yLk+k++g ++e+e+ PGSC0003DMP400035655 6 LPPGFRFHPTDDELVGYYLKRKTDGLEIEMEQ 37 79*************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-10 | 4 | 42 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.054 | 6 | 133 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-8 | 7 | 44 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAGATLPPGF RFHPTDDELV GYYLKRKTDG LEIEMEQFPG DGTYLHYEFP NVASWQPNDR 60 IEVTSSSTSL SLRGEVELSG DLSSFGCVSP YSIHGSYTGL YDNSVMSYEG NEGWDQANLG 120 DVNGLWSDED NFQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400035655 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 4e-62 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760809.1 | 2e-41 | PREDICTED: protein ATAF2-like | ||||
Refseq | XP_016501877.1 | 2e-41 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | M1BU31 | 2e-93 | M1BU31_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052876 | 3e-94 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6256 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 2e-16 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400035655 |
Publications ? help Back to Top | |||
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