PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400035623

Common Name

LOC102592979

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 415aa MW: 46317.6 Da PI: 9.5118

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400035623	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.2	2.6e-19	32	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + t + s++ +fd+ PGSC0003DMP400035623 32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDN 120 8*********************************9977766667788999***************99987888899***** PP trihelix 85 lea 87 ++a PGSC0003DMP400035623 121 MDA 123 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-19	31	124	No hit	No description
PROSITE profile	PS50090	6.899	33	93	IPR017877	Myb-like domain
SMART	SM00595	1.1E-9	40	129	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSSNVDSTVV VAEDAVPEEK PPPPARRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA 60 DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN 120 MDAMENGTTV AAIRSNNQQI AEKQQTVTAV SGDGYALKTM IDQNLLKLKI NQKNGIASPP 180 NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGPSKQEHP HDLEFSSGYR MKNGISMKAK 240 RTGRIIGDVN GFDQGGIKGG GNFVMNPSFD CDEGSEYNNG SNANDGFHIR NMGVSSSRRS 300 YNSGNVEQQP NLDSRFSPGL SKFGKKGGGG VGMKRGRDPV EEMVLSIKLL GEGFMKMEKM 360 KMEMAKEVEQ MRMEMEMKRN EMILESQKQI VEAFVKVLGE VHKNKNAKTV SPES*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSSNVDSTVV VAEDAVPEEK PPPPARRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA  60
DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN  120
MDAMENGTTV AAIRSNNQQI AEKQQTVTAV SGDGYALKTM IDQNLLKLKI NQKNGIASPP  180
NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGPSKQEHP HDLEFSSGYR MKNGISMKAK  240
RTGRIIGDVN GFDQGGIKGG GNFVMNPSFD CDEGSEYNNG SNANDGFHIR NMGVSSSRRS  300
YNSGNVEQQP NLDSRFSPGL SKFGKKGGGG VGMKRGRDPV EEMVLSIKLL GEGFMKMEKM  360
KMEMAKEVEQ MRMEMEMKRN EMILESQKQI VEAFVKVLGE VHKNKNAKTV SPES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400035623

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362480.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	M1BU20	0.0	M1BU20_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400052836	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-31	Trihelix family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400035623
Entrez Gene	102592979

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]