PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035530
Common NameLOC102589796
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 126aa    MW: 13680.6 Da    PI: 9.8968
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035530genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.33.6e-332882155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprlrWt eLH++Fv+av++LGG++kAtPk +l+lm++kgLtl+h+kSHLQkYRl
  PGSC0003DMP400035530 28 KPRLRWTAELHQQFVDAVTKLGGPDKATPKLVLRLMGMKGLTLYHLKSHLQKYRL 82
                          79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-322582IPR009057Homeodomain-like
PROSITE profilePS5129413.1162585IPR017930Myb domain
TIGRFAMsTIGR015574.2E-242883IPR006447Myb domain, plants
SuperFamilySSF466891.2E-162883IPR009057Homeodomain-like
PfamPF002495.4E-103081IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MYNAIDGVGG GESYLYENDG VMMTRDPKPR LRWTAELHQQ FVDAVTKLGG PDKATPKLVL  60
RLMGMKGLTL YHLKSHLQKY RLGQLAKKQN AAEANKENSG DSSGQFGLQS SGPSTSSLSM  120
NFMQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-212884258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-54HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755188e-54HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353697.13e-88PREDICTED: myb family transcription factor APL-like isoform X1
SwissprotC0SVS41e-43PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLM1BTV03e-87M1BTV0_SOLTU; Uncharacterized protein
TrEMBLM1BTV18e-87M1BTV1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000526954e-76(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.15e-36G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]