PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400035530 | ||||||||
Common Name | LOC102589796 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 126aa MW: 13680.6 Da PI: 9.8968 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.3 | 3.6e-33 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++kAtPk +l+lm++kgLtl+h+kSHLQkYRl PGSC0003DMP400035530 28 KPRLRWTAELHQQFVDAVTKLGGPDKATPKLVLRLMGMKGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-32 | 25 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.116 | 25 | 85 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.2E-24 | 28 | 83 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.2E-16 | 28 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-10 | 30 | 81 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
MYNAIDGVGG GESYLYENDG VMMTRDPKPR LRWTAELHQQ FVDAVTKLGG PDKATPKLVL 60 RLMGMKGLTL YHLKSHLQKY RLGQLAKKQN AAEANKENSG DSSGQFGLQS SGPSTSSLSM 120 NFMQG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-21 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-21 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-21 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-21 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-21 | 28 | 84 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400035530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 8e-54 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 8e-54 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353697.1 | 3e-88 | PREDICTED: myb family transcription factor APL-like isoform X1 | ||||
Swissprot | C0SVS4 | 1e-43 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | M1BTV0 | 3e-87 | M1BTV0_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1BTV1 | 8e-87 | M1BTV1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400052695 | 4e-76 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 5e-36 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400035530 |
Entrez Gene | 102589796 |
Publications ? help Back to Top | |||
---|---|---|---|
|