PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035466
Common NameLOC102601154
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 398aa    MW: 44403.6 Da    PI: 10.3617
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035466genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.94.2e-1697187186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           +W++  +++Liea  ++  +l+rg+l+ ++Weev++++     + +++ r+ +qCk++++ l+k+yk +++  ++   +  st+p+f++
  PGSC0003DMP400035466  97 CWSEAATHTLIEAWGSRYVELNRGNLRHQHWEEVADAVntvhgHTKKLYRTDIQCKNRIDTLKKKYKIERAKVSQSPGRYISTWPFFSS 185
                           7*****************************************999***************************999989999******99 PP

              trihelix  85 le 86 
                           l+
  PGSC0003DMP400035466 186 LN 187
                           85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-2595187No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MFRRHNHTDN PSPITDSNPN SSTIFHSSAA DVSHSGTMSD DDHLAPPFSN NNSPSPSHSR  60
SPPPCRDNKL LALPPPPMVT PASVSARTPV FPAREDCWSE AATHTLIEAW GSRYVELNRG  120
NLRHQHWEEV ADAVNTVHGH TKKLYRTDIQ CKNRIDTLKK KYKIERAKVS QSPGRYISTW  180
PFFSSLNVLI GVTAKVSPPP AAAILPPQRR MPPTQATSPL QWRAPPPETS PLQWRSPPPE  240
MPPFQWRTPP VPPPPLLGIP VGLRSKRPAA AMDYTVSRRN FSAMAAAAAA ASDDSYEEKE  300
ESETSSVAAS AMAIAACRSK RKKSGGLVEG YKMLAESIGK FSEIYERVEK AKQRQMIELE  360
KQRMQFAKDL EIQRMKLIME SQVHLEKLKR SKPQFRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348872.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLM1BTN60.0M1BTN6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000526070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-44sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]