PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035338
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 289aa    MW: 32620.5 Da    PI: 8.6038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035338genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-092469346
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          rWT+eE + + +a +++ ++    W  +a++++ g+t ++++  ++ 
  PGSC0003DMP400035338 24 RWTPEENKVFEEALALFDKDtpdKWYNVAAMIP-GKTVNDVIKQYRE 69
                          9********************************.********99986 PP
2Myb_DNA-binding47.64e-15133177347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+++++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  PGSC0003DMP400035338 133 PWTEEEHKQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-41971IPR009057Homeodomain-like
PROSITE profilePS512938.2942075IPR017884SANT domain
SMARTSM007174.0E-102173IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-112377IPR009057Homeodomain-like
CDDcd001673.84E-72471No hitNo description
PfamPF002492.2E-72470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12124182IPR009057Homeodomain-like
PROSITE profilePS5129420.565126182IPR017930Myb domain
SuperFamilySSF466892.37E-17128181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17129181IPR006447Myb domain, plants
SMARTSM007173.9E-13130180IPR001005SANT/Myb domain
CDDcd001675.81E-11133178No hitNo description
PfamPF002491.3E-12133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGFLSPATYI KNSSWLFEEN KGTRWTPEEN KVFEEALALF DKDTPDKWYN VAAMIPGKTV  60
NDVIKQYREL VEDISDIEAG LIPVPGYTTS NSFTLEWVNN QDAFHGFKQL YGQSGKRGSS  120
NRSSEHERKK GVPWTEEEHK QFLLGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR  180
QLSGGKDKRR SSIHDITVVN LMESKSTSPE DHKSAPSQQT QQHSKMNGMV KTLCEYNSPN  240
QESDITFNSS SGGLMTMPFR GAPSYGLEHG MHNIALQGLQ FGNYNTMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-172290876RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400035338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363051.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-101DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM1BTD10.0M1BTD1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000524110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-108MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]